Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30251
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   116   8e-27
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           113   4e-26
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           109   7e-25
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.54 
At4g26980.1 68417.m03882 expressed protein                             28   2.9  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  116 bits (279), Expect = 8e-27
 Identities = 59/89 (66%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
           QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPFTG
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTG 63

Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
            VS RGRIL+G     KMQRTI++RRDYL
Sbjct: 64  TVSIRGRILSGTCHSAKMQRTIIVRRDYL 92



 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +2

Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
           R+EKRH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFN LKV
Sbjct: 100 RYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  113 bits (273), Expect = 4e-26
 Identities = 57/89 (64%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
           QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPFTG
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTG 63

Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
            VS RGRIL G     KMQRTI++RRDYL
Sbjct: 64  TVSIRGRILAGTCHSAKMQRTIIVRRDYL 92



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 31/45 (68%), Positives = 37/45 (82%)
 Frame = +2

Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
           R+EKRH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFN LKV
Sbjct: 100 RYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  109 bits (263), Expect = 7e-25
 Identities = 57/89 (64%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
           QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPFTG
Sbjct: 4   QTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTG 63

Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
            VS RGRIL G     KMQRTI++RR+YL
Sbjct: 64  TVSIRGRILAGTCHSAKMQRTIIVRRNYL 92



 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 32/45 (71%), Positives = 37/45 (82%)
 Frame = +2

Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
           R+EKRH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFN LKV
Sbjct: 100 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 39  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 108 KTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQK 212
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,630,421
Number of Sequences: 28952
Number of extensions: 179092
Number of successful extensions: 348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)