BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30250 (410 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 122 2e-29 SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 118 4e-28 SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.37 SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 2.0 SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 3.5 SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 4.6 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 6.1 SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.1 SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 6.1 SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 24 8.0 >SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosaccharomyces pombe|chr 1|||Manual Length = 119 Score = 122 bits (294), Expect = 2e-29 Identities = 53/76 (69%), Positives = 64/76 (84%) Frame = +2 Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205 MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60 Query: 206 MFQLPKLYAKLHYCVS 253 + +PKLY KL YCVS Sbjct: 61 EYTIPKLYIKLQYCVS 76 Score = 37.5 bits (83), Expect = 8e-04 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 3/40 (7%) Frame = +1 Query: 256 AIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 366 AIHS+VVR RS++ RRIRT PP+ + RD + P AV + Sbjct: 78 AIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117 >SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Schizosaccharomyces pombe|chr 1|||Manual Length = 120 Score = 118 bits (284), Expect = 4e-28 Identities = 52/83 (62%), Positives = 66/83 (79%) Frame = +2 Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205 MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60 Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274 + +PK+Y KL YCVS A++ Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARV 83 Score = 37.1 bits (82), Expect = 0.001 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 3/40 (7%) Frame = +1 Query: 256 AIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 366 AIH++VVR RS++ RRIRT PP+ + RD R P A+ + Sbjct: 78 AIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117 >SPCC126.15c |sec65||signal recognition particle subunit Sec65 |Schizosaccharomyces pombe|chr 3|||Manual Length = 199 Score = 28.7 bits (61), Expect = 0.37 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +2 Query: 107 RCVPKDKAIKKFVIRNIVEAAAVRDI 184 RCVPKDKAI + +NI A VRD+ Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43 >SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces pombe|chr 1|||Manual Length = 1564 Score = 26.2 bits (55), Expect = 2.0 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +2 Query: 152 NIVEAAAVRDINDASVYPMFQLPKL-YAKLHYCVSSPSTAKLSGTD 286 NIV+ R +ND + + P++ YA L++C PS+ L+ D Sbjct: 1482 NIVKFLGNRIMNDMREFVLLAFPQIQYALLNWC-QPPSSISLASID 1526 >SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 25.4 bits (53), Expect = 3.5 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 272 LSGTDRRKTEESVLLPRVTSLGT 340 ++ DR +TE SVL RVT +G+ Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23 >SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 25.0 bits (52), Expect = 4.6 Identities = 15/62 (24%), Positives = 31/62 (50%) Frame = -2 Query: 187 VNISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLRS 8 +N +R+ +PN FDSL + + R +++G N++ +S + + ++N S Sbjct: 472 LNNFQQRKLTPLPNSMSFDSLNEFESERNTPSTYGQNISPLPQFSSPSLSSDAFLTNSNS 531 Query: 7 GE 2 E Sbjct: 532 SE 533 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 24.6 bits (51), Expect = 6.1 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Frame = +2 Query: 113 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY--AKLHYCVSSPSTAKLSGTD 286 +PKDKA++ RN + A I DA + + + + +K S KL+ Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTKP 226 Query: 287 RRKTEESVLLPRVTSLGTCHVHRQCKGSD 373 + ++ +P T + ++RQ SD Sbjct: 227 QVTAKDQNAMPS-TGISGFEINRQKDTSD 254 >SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 24.6 bits (51), Expect = 6.1 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Frame = -2 Query: 82 FNVTTSMLGASSITAL---TSHVSNLRSGE 2 FN+ TS +SS+T+ +SH+SN + + Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISNFTNSQ 129 >SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp9|Schizosaccharomyces pombe|chr 3|||Manual Length = 610 Score = 24.6 bits (51), Expect = 6.1 Identities = 10/40 (25%), Positives = 23/40 (57%) Frame = -2 Query: 166 RFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASS 47 + +DV + +L + + P+A+C + ++ TS++ SS Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154 >SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 787 Score = 24.2 bits (50), Expect = 8.0 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = +2 Query: 230 AKLHYCVSS--PSTAKLSGTDRRKTEESVLLPRVTSLGTC 343 A L+Y V+ P+ K G D +K + + +T TC Sbjct: 577 AALNYAVNEYVPTYRKTFGNDSKKIKNKITAEGITGSSTC 616 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,416,821 Number of Sequences: 5004 Number of extensions: 23962 Number of successful extensions: 62 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 62 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 142254980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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