BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30250 (410 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 124 2e-29 01_06_1293 - 36050847-36051304,36052343-36052826 29 1.1 02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 28 2.5 12_01_0236 - 1775941-1776034,1776185-1776504,1776569-1776786,177... 27 4.4 11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 5.8 08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 5.8 09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 27 7.7 09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 7.7 07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 7.7 05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 7.7 >01_06_1177 + 35147036-35147038,35147128-35147220,35147322-35147406, 35147588-35147760 Length = 117 Score = 124 bits (300), Expect = 2e-29 Identities = 53/76 (69%), Positives = 65/76 (85%) Frame = +2 Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205 MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60 Query: 206 MFQLPKLYAKLHYCVS 253 + LPKLYAK+H+CVS Sbjct: 61 GYVLPKLYAKVHHCVS 76 Score = 30.7 bits (66), Expect = 0.47 Identities = 15/33 (45%), Positives = 23/33 (69%) Frame = +1 Query: 256 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 354 AIH+ +VR RS+++RR R PP+ F R + P+ Sbjct: 78 AIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109 >01_06_1293 - 36050847-36051304,36052343-36052826 Length = 313 Score = 29.5 bits (63), Expect = 1.1 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 185 NDASVYPMFQLPKLYAKLHYCVSSPSTAKLSGT 283 N+AS YP Q P LY + C STA+ T Sbjct: 175 NNASYYPQQQTPLLYPGMEVCPHDKSTAQPPAT 207 >02_05_1197 - 34908382-34908582,34908664-34908837,34909239-34909337, 34909444-34909644,34910229-34910336,34910498-34910882, 34911132-34911584,34911868-34912094,34912211-34912270 Length = 635 Score = 28.3 bits (60), Expect = 2.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 164 AAAVRDINDASVYPMFQLPKLYAKLHYCVSSPSTAK 271 +AA RD+ + V+PM L LY +L VS TA+ Sbjct: 40 SAAERDLLNFMVFPMLLLRLLYGQLWITVSRHQTAR 75 >12_01_0236 - 1775941-1776034,1776185-1776504,1776569-1776786, 1777315-1777723 Length = 346 Score = 27.5 bits (58), Expect = 4.4 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 194 SVYPMFQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEES-VLLPR 322 S+ P+ L K++A L + PST S TDR+ +S V+L R Sbjct: 124 SLLPLLALLKIFAGLANLIYGPSTVFGSRTDRQLANDSGVMLLR 167 >11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042, 5344217-5344333,5344438-5344506,5344631-5344725, 5345580-5345658,5346499-5346563,5347368-5347461, 5347675-5347744,5348363-5349357 Length = 931 Score = 27.1 bits (57), Expect = 5.8 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 258 HPQQSCQEQIEERQKNPYSSQE 323 +PQQS Q+Q EE+Q P SS + Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637 >08_02_1601 - 28138206-28138597,28138928-28139054,28139150-28139914, 28140714-28140929,28141433-28141903 Length = 656 Score = 27.1 bits (57), Expect = 5.8 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = -2 Query: 193 GIVNISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFN--VTTSMLGASSIT 41 GI + D +YD + LF+ L+ P A +SH F+ V T + S+ T Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491 >09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292, 14059378-14059539,14059642-14059768,14059869-14060200, 14060289-14061083,14061379-14061714,14061791-14062730, 14063338-14063588 Length = 1633 Score = 26.6 bits (56), Expect = 7.7 Identities = 15/58 (25%), Positives = 27/58 (46%) Frame = -2 Query: 181 ISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLRS 8 +S+ R NH D+ H P A+C H ++ + LG+ +T ++L+S Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678 >09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 Length = 433 Score = 26.6 bits (56), Expect = 7.7 Identities = 15/50 (30%), Positives = 20/50 (40%) Frame = +2 Query: 29 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 178 T RR A G G AV C +CA P + A+ + + A R Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127 >07_03_0011 + 12370624-12370684,12372573-12372718,12372793-12373129, 12374323-12374452,12375346-12375406,12375572-12375618, 12376873-12376950,12377195-12377345,12377495-12377558, 12377735-12377893,12378007-12378128,12378952-12378981, 12379050-12379124,12379563-12379644,12379809-12379938, 12381417-12382164,12382833-12383054,12383127-12383276, 12384851-12384904,12384985-12385058,12386130-12386204, 12386365-12386584 Length = 1071 Score = 26.6 bits (56), Expect = 7.7 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 85 REMHKLRAVRAKRQGYQKVRD*EHRRSGGGQR 180 R+ K ++ R K +G +K R EH R GG+R Sbjct: 101 RKREKTQSDRDKDKGKEKERMEEHERRPGGER 132 >05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792, 4861409-4863136 Length = 810 Score = 26.6 bits (56), Expect = 7.7 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -2 Query: 175 DRRRFYDVPNHELFD 131 DR FYD PN+E FD Sbjct: 354 DRTLFYDEPNYEAFD 368 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,077,827 Number of Sequences: 37544 Number of extensions: 185240 Number of successful extensions: 558 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 542 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 558 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 730630428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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