BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30250 (410 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical pr... 126 8e-30 AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 29 1.3 AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 29 1.3 AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 27 5.3 AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 27 5.3 Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 27 7.0 U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 26 9.2 U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 26 9.2 U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 26 9.2 AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 26 9.2 AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 26 9.2 >Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical protein F39B2.6 protein. Length = 117 Score = 126 bits (303), Expect = 8e-30 Identities = 57/83 (68%), Positives = 64/83 (77%) Frame = +2 Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205 MT KRRN GR K RGHV +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y Sbjct: 1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60 Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274 + LPKLY KLHYC++ +K+ Sbjct: 61 QYALPKLYHKLHYCIACAIHSKV 83 Score = 36.3 bits (80), Expect = 0.009 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = +1 Query: 256 AIHSKVVRNRSKKDRRIRTPP 318 AIHSKVVRNRS++ RR R PP Sbjct: 78 AIHSKVVRNRSREARRDRNPP 98 >AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical protein Y111B2A.10b protein. Length = 312 Score = 29.1 bits (62), Expect = 1.3 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +2 Query: 74 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 244 H+K ++C NC+ +K+++ +IR+ E A ++ A +L P K H Y Sbjct: 80 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139 Query: 245 C 247 C Sbjct: 140 C 140 >AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical protein Y111B2A.10a protein. Length = 430 Score = 29.1 bits (62), Expect = 1.3 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +2 Query: 74 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 244 H+K ++C NC+ +K+++ +IR+ E A ++ A +L P K H Y Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257 Query: 245 C 247 C Sbjct: 258 C 258 >AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical protein Y51A2A.11 protein. Length = 193 Score = 27.1 bits (57), Expect = 5.3 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +2 Query: 17 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 118 +R + K+ +G A G ++ RC N A C P Sbjct: 83 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116 >AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical protein Y51A2A.7 protein. Length = 260 Score = 27.1 bits (57), Expect = 5.3 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +2 Query: 17 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 118 +R + K+ +G A G ++ RC N A C P Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183 >Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical protein B0001.5 protein. Length = 553 Score = 26.6 bits (56), Expect = 7.0 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 252 HRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 365 ++ P +S ++ + QKN Y+S E GH TS+ +A+ Sbjct: 378 YKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411 >U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of locomotion defectiveprotein 1, isoform c protein. Length = 442 Score = 26.2 bits (55), Expect = 9.2 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352 F++ L+ +L + S+ S A L R T E+ LLP++ S TC ++ Sbjct: 77 FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123 >U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of locomotion defectiveprotein 1, isoform a protein. Length = 489 Score = 26.2 bits (55), Expect = 9.2 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352 F++ L+ +L + S+ S A L R T E+ LLP++ S TC ++ Sbjct: 77 FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123 >U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of locomotion defectiveprotein 1, isoform b protein. Length = 475 Score = 26.2 bits (55), Expect = 9.2 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352 F++ L+ +L + S+ S A L R T E+ LLP++ S TC ++ Sbjct: 77 FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123 >AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical protein Y39B6A.30 protein. Length = 1408 Score = 26.2 bits (55), Expect = 9.2 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +2 Query: 134 KKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSSPSTAKLSGTDR 289 + + RNI A+A+ +N+AS M + KL +L VS PS SG R Sbjct: 260 ENLIKRNIDLASALSAVNEASRSDMMTVSKLSDRL---VSIPSRKYTSGFSR 308 >AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated chloride channel protein. Length = 489 Score = 26.2 bits (55), Expect = 9.2 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352 F++ L+ +L + S+ S A L R T E+ LLP++ S TC ++ Sbjct: 77 FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,004,960 Number of Sequences: 27780 Number of extensions: 142151 Number of successful extensions: 405 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 396 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 405 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 662437636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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