Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30248
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 133 1e-32
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 133 1e-32
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 37 0.002
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.1
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 25 5.4
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 5.4
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.4
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 7.1
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 7.1
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 7.1
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 7.1
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 9.4
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 24 9.4
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 133 bits (322), Expect = 1e-32
Identities = 62/96 (64%), Positives = 80/96 (83%), Gaps = 3/96 (3%)
Frame = +2
Query: 2 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 182 TVKKGKPELRKKVMPAVVIRQRKP---SEGVMEYLY 280
TVKKGKP+LRKK+MPA+V+RQRK +GV YLY
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGV--YLY 96
Score = 90.6 bits (215), Expect = 1e-19
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = +1
Query: 256 RRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 384
RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 88 RRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 133 bits (322), Expect = 1e-32
Identities = 62/96 (64%), Positives = 80/96 (83%), Gaps = 3/96 (3%)
Frame = +2
Query: 2 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 182 TVKKGKPELRKKVMPAVVIRQRKP---SEGVMEYLY 280
TVKKGKP+LRKK+MPA+V+RQRK +GV YLY
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGV--YLY 96
Score = 90.6 bits (215), Expect = 1e-19
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = +1
Query: 256 RRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 384
RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 88 RRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 253 VRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 363
VRR DG ++ F+DNA V+VN + E G+ I VA E
Sbjct: 73 VRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANE 109
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 3.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 335 EPFISPLLLTMTPALSSKYINTPS 264
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 253 VRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 342
+ + DG + E N ++VN +M+G+A+
Sbjct: 212 ISKDDGALLLNERNVEILVNKLTQMRGAAL 241
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 129 LIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPR 7
L+P A Y P +A T+PT P I++ PAEPP+
Sbjct: 175 LLPPNAPYYHEIEPPRTASN-TSPT--PNSIKSAHPAEPPK 212
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 94 CPCVVGAVDYCSHWETQGDTEFR 26
CPC + + SHW+ + D FR
Sbjct: 14 CPCFLSCCAFMSHWKLK-DFSFR 35
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +1
Query: 22 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGR 159
G+ Y PG P + + G E R R + P + A GR
Sbjct: 103 GNVCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYEQARGR 148
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 303 DTRIVLKVYKYSITPSDGFRCLMTTAGITFFRSSGLPFL 187
D+RI L +K S P+ R M + FF LPFL
Sbjct: 88 DSRIPLVNWKTSTNPTLQVRAYMLDLLLPFFTLDLLPFL 126
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 383 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRL 258
R H+ AH+ AEP ++P++ + P+++ +TPS L
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVL 102
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 22 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGH 171
G +P+ P PSGSS R + G+ RY+ + G GH
Sbjct: 421 GDGVPFSPSMPSGSS---RGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGH 467
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 111 ITYRFFAPVLSAQLITAPTGRPREIR 34
+ Y F P+LS QL T P +P IR
Sbjct: 80 VAYSFSDPILSTQLRTPPP-QPTSIR 104
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 368 AHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLT 252
A S+ P+ EPF++ +L ++KYI ++L T
Sbjct: 743 AGSMRRSPIGFEPFVTEILSAGNKKEAAKYIPRCTQLTT 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,908
Number of Sequences: 5004
Number of extensions: 38343
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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