Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30248
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          157   3e-39
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         30   1.0  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         30   1.0  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              29   2.3  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   3.1  
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_33725| Best HMM Match : Kelch_1 (HMM E-Value=3.59994e-42)           27   5.4  
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)                   27   7.2  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)                    27   7.2  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    27   7.2  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 27   7.2  
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)                    27   7.2  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    27   7.2  
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                27   7.2  
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)                    27   7.2  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 27   9.5  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  157 bits (382), Expect = 3e-39
 Identities = 73/83 (87%), Positives = 80/83 (96%)
 Frame = +2

Query: 2   RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181
           RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82

Query: 182 TVKKGKPELRKKVMPAVVIRQRK 250
           TVKKGKPELRKKVMPAVVIRQRK
Sbjct: 83  TVKKGKPELRKKVMPAVVIRQRK 105



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 RRRDGVFIYFEDNAGVIVNNK 318
           RR++GVF+YFE N  V V  +
Sbjct: 108 RRKNGVFLYFEANIKVRVRKQ 128


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 50   LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 142
            L +GA ++CADN G   L  +A QG    +N
Sbjct: 913  LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 50  LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 142
           L +GA ++CADN G   L  +A QG    +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/79 (26%), Positives = 29/79 (36%)
 Frame = +1

Query: 106 CDRCPRYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGNAGSGHQAAETVRRRDGVFIYF 285
           CD CPR     ++ A G  RG  C              N    +   +  R RDG F   
Sbjct: 415 CDNCPRVWNKRQRDANGDGRGDACTADPDDDGIEGSHDNCPMHYNPEQLDRDRDG-FGDT 473

Query: 286 EDNAGVIVNNKGEMKGSAI 342
            DN   + NN+ +   + I
Sbjct: 474 CDNCPAVPNNQSDTNQNLI 492


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 147 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 4
           SLF++     T  T    AP L    + APT  P   ++ AP  PP P
Sbjct: 67  SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 133 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 35
           T   + + +I   CP VVG V+ CS W     T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 43  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 180
           P   S SS+  R +H+GK S         RSP  T G     HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151


>SB_33725| Best HMM Match : Kelch_1 (HMM E-Value=3.59994e-42)
          Length = 635

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +2

Query: 203 ELRKKVMPAVVIRQRKPS--EGVMEYLYTLRT 292
           E+++K    +V++Q K S  E V+EYLYT +T
Sbjct: 66  EMKEKQENKIVLKQVKASVMENVLEYLYTGKT 97


>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 346

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 1
           R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 283 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 316


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 217  GNAGSGHQAAETVRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 360
            G  G G +  ++  RR G  +    N+G+ V      + S ++ PVA+
Sbjct: 1174 GEGGDGKKRRKSEFRRPGADLAASWNSGIYVEEMYNTQASTVSQPVAR 1221


>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
          Length = 347

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 1
           R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 287 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 320


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102  RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 1
            R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 963  RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 996


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102  RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 1
            R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 1092 RAYTPALPT-IPMAPSGAPAKTPSVAPAAPSPRPL 1125


>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
          Length = 752

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 327 HFALVIDYDTR-IVLKVYKYSITPSDGF 247
           +FAL I+  TR + + +Y Y  TPSD F
Sbjct: 47  YFALDINSKTRELTIDIYDYERTPSDDF 74


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 180 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 61
           AT  S + A+ SL      PW+  T+R   P +SA+  TA
Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855


>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 820

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 61  SSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDC 177
           +S   RR+ RG+   CD C  YQ    Q +    RG DC
Sbjct: 440 TSKNYRRKQRGQGKQCDNC-GYQHMANQESCPA-RGKDC 476


>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
          Length = 865

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 1
           R + P L   +  AP+G P +  + APA P PRPL
Sbjct: 805 RAYTPALPT-IPQAPSGAPAKTLSVAPAAPSPRPL 838


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 46  GSPSGSSNQLRRQH--RGKESVCDRCPRYQRSPEQTAGGRFRGH 171
           G P G   Q  + H  RG +   DR PR   S   T+GG   GH
Sbjct: 306 GPPDGPHGQRMQHHDIRGPDPRGDRGPRGPPSGVPTSGGPPPGH 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,917
Number of Sequences: 59808
Number of extensions: 344109
Number of successful extensions: 863
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)