Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30248
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   146   9e-36
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode ast...    27   4.8  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    27   6.3  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     27   6.3  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     27   6.3  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    27   8.3  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  146 bits (353), Expect = 9e-36
 Identities = 68/83 (81%), Positives = 77/83 (92%)
 Frame = +2

Query: 2   RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181
           RGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V 
Sbjct: 4   RGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVC 63

Query: 182 TVKKGKPELRKKVMPAVVIRQRK 250
           +VKKGKPELRKKV+  VVIRQRK
Sbjct: 64  SVKKGKPELRKKVLQGVVIRQRK 86



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 41/43 (95%), Positives = 42/43 (97%)
 Frame = +1

Query: 256 RRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 384
           RR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 89  RRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -2

Query: 198 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 22
           +PF+ T     +  P A ++ R P+ P+   T    AP      +  PT  PR I    P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188

Query: 21  AEPPRPL 1
            +P RP+
Sbjct: 189 QQPFRPI 195


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 153 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 61
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 43  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138
           PG P G+ N       G    CD CP  + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298


>AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode
           astacin protease protein30 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -2

Query: 282 VYKYSITPS---DGFRCLMTTAGITF--FRSSGLPFLTVATIMSPEPAAGSLFRRPLIPW 118
           VY+ + TP+   D F        +T   F  +   F T+AT+  P P  G     P +P 
Sbjct: 52  VYEVNTTPAPHFDNFIWQQNAPAVTPEPFTFAPFSFPTLATVAPPAPGPGGPTLEPFLPT 111

Query: 117 TA 112
           TA
Sbjct: 112 TA 113


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 34  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 34  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 34  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 34  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 34  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138
           P  PG+P            G E  CD CP  + +P
Sbjct: 315 PGQPGAPGQQGEPGEDGESGSEGACDHCPPPRTAP 349


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +2

Query: 77  ADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMI-----VATVKKGKPELRKKVMPAVVIR 241
           AD  G  NL  + + GIK R+ ++  +  GD I     V T  K + E  +K+  A+   
Sbjct: 541 ADVDG-NNLKTVILGGIKARITKIGDSTFGDFIKEELKVHTCLKAQEEQSRKLSQAIQAT 599

Query: 242 Q--RKPSEGVME 271
           Q  RK  E ++E
Sbjct: 600 QSLRKLDEKMLE 611


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,733,471
Number of Sequences: 27780
Number of extensions: 234352
Number of successful extensions: 650
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)