BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30248 (451 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 146 9e-36 U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 29 1.2 U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 3.6 Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 4.8 AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode ast... 27 4.8 Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 6.3 Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 6.3 X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 6.3 X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 6.3 AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 8.3 AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ... 27 8.3 >U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal protein, large subunitprotein 23 protein. Length = 140 Score = 146 bits (353), Expect = 9e-36 Identities = 68/83 (81%), Positives = 77/83 (92%) Frame = +2 Query: 2 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181 RGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V Sbjct: 4 RGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVC 63 Query: 182 TVKKGKPELRKKVMPAVVIRQRK 250 +VKKGKPELRKKV+ VVIRQRK Sbjct: 64 SVKKGKPELRKKVLQGVVIRQRK 86 Score = 94.3 bits (224), Expect = 4e-20 Identities = 41/43 (95%), Positives = 42/43 (97%) Frame = +1 Query: 256 RRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 384 RR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR Sbjct: 89 RRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131 >U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical protein F56D3.1 protein. Length = 441 Score = 29.5 bits (63), Expect = 1.2 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = -2 Query: 198 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 22 +PF+ T + P A ++ R P+ P+ T AP + PT PR I P Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188 Query: 21 AEPPRPL 1 +P RP+ Sbjct: 189 QQPFRPI 195 >U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical protein W03B1.2 protein. Length = 814 Score = 27.9 bits (59), Expect = 3.6 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 153 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 61 A LFR ++P+ TY F +L L+TA Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592 >Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical protein C44C10.1 protein. Length = 300 Score = 27.5 bits (58), Expect = 4.8 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +1 Query: 43 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138 PG P G+ N G CD CP + +P Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298 >AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode astacin protease protein30 protein. Length = 710 Score = 27.5 bits (58), Expect = 4.8 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = -2 Query: 282 VYKYSITPS---DGFRCLMTTAGITF--FRSSGLPFLTVATIMSPEPAAGSLFRRPLIPW 118 VY+ + TP+ D F +T F + F T+AT+ P P G P +P Sbjct: 52 VYEVNTTPAPHFDNFIWQQNAPAVTPEPFTFAPFSFPTLATVAPPAPGPGGPTLEPFLPT 111 Query: 117 TA 112 TA Sbjct: 112 TA 113 >Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical protein F15H10.2 protein. Length = 316 Score = 27.1 bits (57), Expect = 6.3 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 34 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 >Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical protein F15H10.1 protein. Length = 316 Score = 27.1 bits (57), Expect = 6.3 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 34 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 >X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. Length = 316 Score = 27.1 bits (57), Expect = 6.3 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 34 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 >X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. Length = 316 Score = 27.1 bits (57), Expect = 6.3 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 34 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 >AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical protein Y51H4A.9 protein. Length = 351 Score = 26.6 bits (56), Expect = 8.3 Identities = 11/35 (31%), Positives = 14/35 (40%) Frame = +1 Query: 34 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 138 P PG+P G E CD CP + +P Sbjct: 315 PGQPGAPGQQGEPGEDGESGSEGACDHCPPPRTAP 349 >AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical protein Y69A2AR.19 protein. Length = 1256 Score = 26.6 bits (56), Expect = 8.3 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Frame = +2 Query: 77 ADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMI-----VATVKKGKPELRKKVMPAVVIR 241 AD G NL + + GIK R+ ++ + GD I V T K + E +K+ A+ Sbjct: 541 ADVDG-NNLKTVILGGIKARITKIGDSTFGDFIKEELKVHTCLKAQEEQSRKLSQAIQAT 599 Query: 242 Q--RKPSEGVME 271 Q RK E ++E Sbjct: 600 QSLRKLDEKMLE 611 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,733,471 Number of Sequences: 27780 Number of extensions: 234352 Number of successful extensions: 650 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 623 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 650 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 788595652 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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