BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30248 (451 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 148 1e-36 At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 148 1e-36 At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 148 1e-36 At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 41 4e-04 At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 37 0.005 At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 37 0.005 At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 1.5 At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containi... 28 3.4 At3g13330.1 68416.m01678 expressed protein 27 4.4 At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 27 4.4 At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family... 27 5.9 At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to ... 27 7.7 At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 27 7.7 >At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana tabacum] Length = 140 Score = 148 bits (359), Expect = 1e-36 Identities = 68/94 (72%), Positives = 83/94 (88%), Gaps = 3/94 (3%) Frame = +2 Query: 2 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181 RGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++A Sbjct: 4 RGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA 63 Query: 182 TVKKGKPELRKKVMPAVVIRQRKP---SEGVMEY 274 TVKKGKP+LRKKV+PAV++RQRKP +GV Y Sbjct: 64 TVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMY 97 Score = 89.4 bits (212), Expect = 1e-18 Identities = 38/43 (88%), Positives = 41/43 (95%) Frame = +1 Query: 256 RRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 384 RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR Sbjct: 89 RRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131 >At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) Length = 140 Score = 148 bits (359), Expect = 1e-36 Identities = 68/94 (72%), Positives = 83/94 (88%), Gaps = 3/94 (3%) Frame = +2 Query: 2 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181 RGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++A Sbjct: 4 RGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA 63 Query: 182 TVKKGKPELRKKVMPAVVIRQRKP---SEGVMEY 274 TVKKGKP+LRKKV+PAV++RQRKP +GV Y Sbjct: 64 TVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMY 97 Score = 89.4 bits (212), Expect = 1e-18 Identities = 38/43 (88%), Positives = 41/43 (95%) Frame = +1 Query: 256 RRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 384 RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR Sbjct: 89 RRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131 >At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655 Length = 140 Score = 148 bits (359), Expect = 1e-36 Identities = 68/94 (72%), Positives = 83/94 (88%), Gaps = 3/94 (3%) Frame = +2 Query: 2 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 181 RGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++A Sbjct: 4 RGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA 63 Query: 182 TVKKGKPELRKKVMPAVVIRQRKP---SEGVMEY 274 TVKKGKP+LRKKV+PAV++RQRKP +GV Y Sbjct: 64 TVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMY 97 Score = 89.4 bits (212), Expect = 1e-18 Identities = 38/43 (88%), Positives = 41/43 (95%) Frame = +1 Query: 256 RRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 384 RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR Sbjct: 89 RRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131 >At1g17560.1 68414.m02163 ribosomal protein L14 family protein similar to GB:Z98756 from (Mycobacterium leprae) Length = 196 Score = 40.7 bits (91), Expect = 4e-04 Identities = 25/80 (31%), Positives = 45/80 (56%) Frame = +2 Query: 50 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPA 229 + +G ++ C DN+ AK V+ +Q ++G+ A GD+IV +VK+ P ++KKV Sbjct: 49 IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKD 102 Query: 230 VVIRQRKPSEGVMEYLYTLR 289 I + K +G++ Y +R Sbjct: 103 -AIPKGKVKKGMVVYGVVVR 121 >At5g46160.2 68418.m05678 ribosomal protein L14 family protein / huellenlos paralog (HLP) contains Pfam profile PF00238: Ribosomal protein L14p/L23e; identical to cDNA HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial product GU:18140859 Length = 172 Score = 37.1 bits (82), Expect = 0.005 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Frame = +2 Query: 50 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 220 + +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V Sbjct: 47 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100 Query: 221 MPAVVIR 241 + VV+R Sbjct: 101 VYGVVVR 107 >At5g46160.1 68418.m05677 ribosomal protein L14 family protein / huellenlos paralog (HLP) contains Pfam profile PF00238: Ribosomal protein L14p/L23e; identical to cDNA HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial product GU:18140859 Length = 173 Score = 37.1 bits (82), Expect = 0.005 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Frame = +2 Query: 50 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 220 + +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V Sbjct: 48 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101 Query: 221 MPAVVIR 241 + VV+R Sbjct: 102 VYGVVVR 108 >At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease family protein contains Pfam domains PF00567: Tudor domain and PF00565: Staphylococcal nuclease homologue Length = 985 Score = 29.1 bits (62), Expect = 1.5 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -1 Query: 226 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 137 R YL PEF+F P GRRQS Q Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233 >At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 576 Score = 27.9 bits (59), Expect = 3.4 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +2 Query: 143 RLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPSEGVMEYLYTL 286 R+ A +I K+GK +L K + ++ R+ KP+EG + +L Sbjct: 350 RVTATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSL 397 >At3g13330.1 68416.m01678 expressed protein Length = 1711 Score = 27.5 bits (58), Expect = 4.4 Identities = 18/67 (26%), Positives = 30/67 (44%) Frame = -2 Query: 423 NVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVIDYDTRIVLKVYKYSITPSDGFR 244 N+ S + V G+T + + G D +LH+ + + ++L V I PS + Sbjct: 997 NILRSLESHVEGSTSGDLVSQIGSMSFDSSSLHWRYNLMANRVLLLLVMSSRIDPSFSLK 1056 Query: 243 CLMTTAG 223 L TAG Sbjct: 1057 ILDETAG 1063 >At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-related contains weak hit to Pfam PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family Length = 286 Score = 27.5 bits (58), Expect = 4.4 Identities = 14/50 (28%), Positives = 21/50 (42%) Frame = -1 Query: 241 PDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILC 92 PD+ ++ FPE T+FD + G + F DSD +C Sbjct: 117 PDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDADVGFHVEDSDITLNVC 166 >At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase Length = 615 Score = 27.1 bits (57), Expect = 5.9 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -3 Query: 182 WPQSCPRNRPPAVCSGDL*YLGQRSHTD 99 WP S + + P +CS + Y+ SH D Sbjct: 96 WPTSGGKEKTPYICSSPIKYMYCNSHPD 123 >At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula] Length = 285 Score = 26.6 bits (56), Expect = 7.7 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -2 Query: 294 IVLKVYKYSITPSDGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFR 136 I+ VYKY TPSD + A + + + + T+ SPEP A ++ R Sbjct: 209 ILYVVYKYCKTPSDLVEKELEAAKLP---EVSIDMVKLGTLTSPEPVAITVVR 258 >At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein kinase, putative contains similarity to receptor protein kinase-like protein GI:10177178 from [Arabidopsis thaliana] Length = 1045 Score = 26.6 bits (56), Expect = 7.7 Identities = 21/76 (27%), Positives = 31/76 (40%) Frame = +2 Query: 59 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 238 G +N + + + V+ ++ + GR P G G IV VKK + V Sbjct: 923 GYTMNITEKSDVYSYGVVLLEILSGRSAVEPQIGDGLHIVEWVKKKMGTFEPALSVLDVK 982 Query: 239 RQRKPSEGVMEYLYTL 286 Q P + V E L TL Sbjct: 983 LQGLPDQIVQEMLQTL 998 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,192,745 Number of Sequences: 28952 Number of extensions: 220908 Number of successful extensions: 649 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 630 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 649 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 732537840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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