Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30247
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    37   0.003
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   2.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   4.6  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 267 CLGKVHTGVSLPSSSLHDWCMTASCAQKYRVH 172
           CL K + G+++P +   +W + + C++KYR H
Sbjct: 152 CLQKTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 293 FFKQSLLEKMLVLFFYFTCSITSFKLLMKFF 385
           FF+ + L++ L+LF+    S+T+  L+ K F
Sbjct: 16  FFRNATLDQCLLLFYLSLFSLTNLFLIQKLF 46


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 151  NILEGSRMHPILLRARCCHTP 213
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 129 VSFPLIL*HTRRKQNAPDTSARTMLSYTNRVKMSWAETPLYVLYQGRRKS 278
           V FP++L + RR+   P  S R    Y++    S  + P Y  ++  R S
Sbjct: 131 VFFPVLLSYKRREMLPPQPSVRRPRFYSSYSYPSSHQDPAYSSFKRHRSS 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,007
Number of Sequences: 5004
Number of extensions: 57632
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)