Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30247
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456...    30   2.1  
07_03_1242 + 25113464-25114150                                         28   6.3  
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126...    28   8.4  

>01_07_0227 +
           42144437-42144446,42145059-42145428,42145528-42145649,
           42145767-42145935,42146236-42146545,42146742-42146825,
           42147012-42147083,42147780-42147821,42147931-42148020,
           42148106-42148213,42148292-42148384,42148540-42148619,
           42148701-42148953,42151222-42151236
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 107 CYIREFDGVLPFDSVTYSKEAECTRYFCAH 196
           C I+  + +L   +   SK A+C RYFC H
Sbjct: 182 CLIKMLEEILERAAEISSKLAQCDRYFCGH 211


>07_03_1242 + 25113464-25114150
          Length = 228

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 134 LPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDT 244
           LP   V Y     C  + C+ D  IH++C D   RDT
Sbjct: 35  LPITGVGY----RCNHHHCS-DFTIHEACADRFARDT 66


>01_03_0278 - 14509481-14509506,14510700-14512291,14512547-14512638,
            14513030-14514412
          Length = 1030

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 2    SLKTLVFCVCVTLASAAIQRSALEPIPDKFSGLQGCYIRE 121
            SL  L  C C +LAS+++  S     P  +S LQG  I E
Sbjct: 960  SLVKLTLCYCKSLASSSLPNS-----PQAYSSLQGLIIME 994


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,211
Number of Sequences: 37544
Number of extensions: 346379
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)