Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30247
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)                32   0.40 
SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7)                  31   0.92 
SB_56715| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)                30   2.1  
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   2.8  
SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_38038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24359| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)                29   2.8  
SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)                 29   2.8  
SB_35672| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)                29   2.8  
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)               28   6.5  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   8.5  

>SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
          Length = 507

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+L   +KI    + F +SL
Sbjct: 278 ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSLHLAEKIAEICSAFNESL 335

Query: 311 LE 316
           L+
Sbjct: 336 LK 337


>SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7)
          Length = 497

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 247 CMYFTKAEENPNIICIL*TKPS*KNVSFIFLFYL 348
           C+Y+ +  +N +++C+   + S +N S +F++YL
Sbjct: 397 CVYYMRTSQNQSLVCVYYMRTS-QNQSLVFVYYL 429


>SB_56715| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
          Length = 279

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+    +KI    + F +SL
Sbjct: 51  ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSPHLDEKIAEICSAFNESL 108

Query: 311 LE 316
           L+
Sbjct: 109 LK 110


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+    +KI    + F +SL
Sbjct: 212 ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSPHLAEKIAEICSAFNESL 269

Query: 311 LE 316
           L+
Sbjct: 270 LK 271


>SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+    +KI    + F +SL
Sbjct: 37  ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSPHLAEKIAEICSAFNESL 94

Query: 311 LE 316
           L+
Sbjct: 95  LK 96


>SB_38038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+    +KI    + F +SL
Sbjct: 51  ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSPHLAEKIAEICSAFNESL 108

Query: 311 LE 316
           L+
Sbjct: 109 LK 110


>SB_24359| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+    +KI    + F +SL
Sbjct: 140 ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSPHLAEKIAEICSAFNESL 197

Query: 311 LE 316
           L+
Sbjct: 198 LK 199


>SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
          Length = 538

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+    +KI    + F +SL
Sbjct: 233 ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSPHLAEKIAEICSAFNESL 290

Query: 311 LE 316
           L+
Sbjct: 291 LK 292


>SB_35672| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
          Length = 257

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 131 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSL 310
           +  + + T        R  C H    H  C +E G   P+C+    +KI    + F +SL
Sbjct: 37  ICDYKNCTQLSTTNVNRLNCFH--TFHNFCLEEAGDQCPICSPHLAEKIAEICSAFNESL 94

Query: 311 LE 316
           L+
Sbjct: 95  LK 96


>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +1

Query: 475 YLKAPLVDLCDRVPTV*IMYDKHN*ESFVTTKTVQYSNNMIINNVIIYRKRSFNYIYDSQ 654
           YL    VD C   P++  MY  H   SF        S N    N +   K +FNY+    
Sbjct: 113 YLNITRVDYCSIAPSLSTMYQYHG-PSFPAYIPQLMSGNPARMNFLQRVKNTFNYVAGQL 171

Query: 655 IPR 663
           I R
Sbjct: 172 IAR 174


>SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)
          Length = 828

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 179 RYFCAHDAVIHQSCKDELGRDTPVCTLPRQKKILT*SAFFKQSLLE 316
           R  C H    H  C +E G   P+C+    +KI    + F +SLL+
Sbjct: 164 RLNCFH--TFHNFCLEEAGDQCPICSPHLAEKIAEICSAFNESLLK 207


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 125  DGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDT 244
            D    FDS  Y  E     YF  H   +H    +E+G D+
Sbjct: 1103 DNESSFDSQDYDLEESSEEYFEEHVRQLHMFSMEEMGEDS 1142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,634,869
Number of Sequences: 59808
Number of extensions: 426408
Number of successful extensions: 931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)