Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30247
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006678-2|AAK68392.2| 315|Caenorhabditis elegans Hypothetical ... 30 1.9
AC006678-1|AAU20842.1| 337|Caenorhabditis elegans Hypothetical ... 30 1.9
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 29 2.5
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 29 2.5
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 29 2.5
Z82086-3|CAB04997.1| 325|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL132860-14|CAB60497.1| 619|Caenorhabditis elegans Hypothetical... 28 5.7
AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical ... 27 9.9
AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical ... 27 9.9
AB071420-1|BAB86940.1| 401|Caenorhabditis elegans 2-amino-3-car... 27 9.9
>AC006678-2|AAK68392.2| 315|Caenorhabditis elegans Hypothetical
protein R05G9.2a protein.
Length = 315
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 654 LRVVYIIKTPFTVYYHVINDHIIRILHSFRG 562
L +++ I +YY VIND + ILH+F G
Sbjct: 201 LFILWAILIGLCLYYQVINDFWLSILHAFTG 231
>AC006678-1|AAU20842.1| 337|Caenorhabditis elegans Hypothetical
protein R05G9.2b protein.
Length = 337
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 654 LRVVYIIKTPFTVYYHVINDHIIRILHSFRG 562
L +++ I +YY VIND + ILH+F G
Sbjct: 223 LFILWAILIGLCLYYQVINDFWLSILHAFTG 253
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
+LLE++ ++ F F +TS + L+ FF+WW
Sbjct: 473 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 503
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
+LLE++ ++ F F +TS + L+ FF+WW
Sbjct: 476 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 506
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
+LLE++ ++ F F +TS + L+ FF+WW
Sbjct: 421 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 451
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
+LLE++ ++ F F +TS + L+ FF+WW
Sbjct: 515 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 545
>Z82086-3|CAB04997.1| 325|Caenorhabditis elegans Hypothetical
protein ZK228.6 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 648 VVYIIKTPFTVYYHVINDHIIRILHSFRGHKRLLIMLIVHNSNCRNTI 505
V+YII ++ YY+ ++ +I S G L MLIVH + T+
Sbjct: 256 VIYIIFAIYSGYYNQAATNVAQIAVSCHGILSTLTMLIVHKPYRQETL 303
>AL132860-14|CAB60497.1| 619|Caenorhabditis elegans Hypothetical
protein Y56A3A.16 protein.
Length = 619
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 324 NIFSRRLCLKNADYVRIFFCLGKVHTGVS--LPSSSLHDWCMT 202
NI R C + DY +FFC H G LP+ L+ W T
Sbjct: 356 NINDREQCPRFCDYYGLFFC-SLCHGGEKSILPARVLNQWSFT 397
>AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical
protein Y71D11A.3a protein.
Length = 352
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 490 TVLLGKLIKFFSQHRVSYEHTGGTYP 413
+VL+G ++ F + ++ + H GG YP
Sbjct: 217 SVLMGNILVLFPKLKLCFAHGGGAYP 242
>AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical
protein Y71D11A.3b protein.
Length = 401
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 490 TVLLGKLIKFFSQHRVSYEHTGGTYP 413
+VL+G ++ F + ++ + H GG YP
Sbjct: 266 SVLMGNILVLFPKLKLCFAHGGGAYP 291
>AB071420-1|BAB86940.1| 401|Caenorhabditis elegans
2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
protein.
Length = 401
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 490 TVLLGKLIKFFSQHRVSYEHTGGTYP 413
+VL+G ++ F + ++ + H GG YP
Sbjct: 266 SVLMGNILVLFPKLKLCFAHGGGAYP 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,885
Number of Sequences: 27780
Number of extensions: 318043
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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