Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30247
(709 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 28 0.075
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 2.8
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 23 3.7
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 23 3.7
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 23 3.7
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 23 3.7
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 23 3.7
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 23 3.7
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 23 3.7
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 23 3.7
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 3.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 5.0
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 6.6
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 28.3 bits (60), Expect = 0.075
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 553 SFVTTKTVQYSNNMIINNVIIYRKRSFNYIYDSQIP 660
S ++ KT+ +NN NN Y+K +N Y Q+P
Sbjct: 83 SSLSNKTIHNNNNYNNNNYNNYKKLYYNINYIEQVP 118
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.0 bits (47), Expect = 2.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 493 VDLCDRVPTV*IMYDKHN*ESFVTTKTVQYSNNMIINNVIIYRKRSFNYIYD 648
+ L D +P +YDKH F+ T+ Y + ++ ++ + S Y+ D
Sbjct: 4 LSLKDILPLNPKLYDKHRAPKFLGQPTIVYFHVTVL-SIDSINEESMTYVAD 54
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 580 YSNNMIINNVIIYRKRSFNYIYDSQIP 660
Y+NN NN Y+K +N Y QIP
Sbjct: 97 YNNNNNYNN---YKKLYYNINYIEQIP 120
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.6 bits (46), Expect = 3.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 433 HTGGTYPVAQKYVPPPKKLHQ 371
H+ G YP ++PP HQ
Sbjct: 300 HSPGVYPSTAGFLPPSYHPHQ 320
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.2 bits (45), Expect = 5.0
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 541 HN*ESFVTTKTVQYSNNMIINNVIIYRKRSFNYIYDSQIP 660
HN ++ NN NN Y+K +N I QIP
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIP 363
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 553 SFVTTKTVQYSNNMIINNVIIYRKRSFNYIYDSQIP 660
S ++ KT+ +NN N +K +N Y QIP
Sbjct: 83 SSLSNKTIHNNNNYKYNYNNNCKKLYYNINYIEQIP 118
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,415
Number of Sequences: 438
Number of extensions: 3738
Number of successful extensions: 29
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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