Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30247
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34120.3 68414.m04233 inositol polyphosphate 5-phosphatase I ...    30   1.7  
At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I ...    30   1.7  
At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I ...    30   1.7  
At5g63040.2 68418.m07909 expressed protein similar to unknown pr...    28   7.0  
At5g63040.1 68418.m07908 expressed protein similar to unknown pr...    28   7.0  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    27   9.2  

>At1g34120.3 68414.m04233 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 589

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 180 DTSARTMLSYTNRVKMSWAETPLYVLYQ 263
           D+      SYT RV +SW E PL +L Q
Sbjct: 286 DSKREERFSYTERVGLSWPEPPLRLLNQ 313


>At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 590

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 180 DTSARTMLSYTNRVKMSWAETPLYVLYQ 263
           D+      SYT RV +SW E PL +L Q
Sbjct: 286 DSKREERFSYTERVGLSWPEPPLRLLNQ 313


>At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 586

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 180 DTSARTMLSYTNRVKMSWAETPLYVLYQ 263
           D+      SYT RV +SW E PL +L Q
Sbjct: 282 DSKREERFSYTERVGLSWPEPPLRLLNQ 309


>At5g63040.2 68418.m07909 expressed protein similar to unknown
           protein (emb|CAB81845.1)
          Length = 366

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 287 SAFFKQSLLEKMLVLFF---YFTCSITSFKLLM 376
           SA F+ SLL   L+LFF    F C + +F L++
Sbjct: 175 SAVFEDSLLTDFLILFFTEALFYCGVAAFLLII 207


>At5g63040.1 68418.m07908 expressed protein similar to unknown
           protein (emb|CAB81845.1)
          Length = 366

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 287 SAFFKQSLLEKMLVLFF---YFTCSITSFKLLM 376
           SA F+ SLL   L+LFF    F C + +F L++
Sbjct: 175 SAVFEDSLLTDFLILFFTEALFYCGVAAFLLII 207


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 80  PDKFSGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDAV 205
           P  F G+QGC  RE +    F+ +  SK  E  +   A+D V
Sbjct: 663 PMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCV 704


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,960
Number of Sequences: 28952
Number of extensions: 290351
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)