BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30246 (726 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g53640.1 68418.m06663 F-box family protein contains F-box dom... 28 5.5 >At5g53640.1 68418.m06663 F-box family protein contains F-box domain Pfam:PF00646 Length = 917 Score = 28.3 bits (60), Expect = 5.5 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 421 QFVPRFNCLGTNLFSCLILVSLNL 350 QF+P+F+ + NL+ C LVSL L Sbjct: 128 QFLPQFHKIHFNLYKCEALVSLRL 151 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,936,712 Number of Sequences: 28952 Number of extensions: 235427 Number of successful extensions: 383 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 383 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1584903024 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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