Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30245
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    30   0.014
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    26   0.23 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    26   0.23 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    26   0.23 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    26   0.23 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.8  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   5.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.6  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 30.3 bits (65), Expect = 0.014
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 295 PAEADSGQCCGKCEPVACVVDGEEKPIG-EKWTSSDFCTNFTCVNLNGTLQVQSSNETC 468
           P +  +G+C  +C   AC  DG +  +G   W +    T    V ++G      +N  C
Sbjct: 494 PVKRGNGRCDEECNTYACEFDGNDCSLGINPWANCTASTRCWEVFMDGICNEDCNNPEC 552



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 191 ECETYECAADGD 226
           EC TY C  DG+
Sbjct: 505 ECNTYACEFDGN 516


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 252 TAASRCSLPSPSAAHSYVSHSYRWGLPLLADLVDIILVSARVLHIS 115
           +AAS     +P   + + +   RW    +A+++D+++ S R + I+
Sbjct: 857 SAASDAYTHAPEGFNEFYNQRRRWVPSTIANIMDLLMDSKRTIEIN 902


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 252 TAASRCSLPSPSAAHSYVSHSYRWGLPLLADLVDIILVSARVLHIS 115
           +AAS     +P   + + +   RW    +A+++D+++ S R + I+
Sbjct: 857 SAASDAYTHAPEGFNEFYNQRRRWVPSTIANIMDLLMDSKRTIEIN 902


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 252 TAASRCSLPSPSAAHSYVSHSYRWGLPLLADLVDIILVSARVLHIS 115
           +AAS     +P   + + +   RW    +A+++D+++ S R + I+
Sbjct: 857 SAASDAYTHAPEGFNEFYNQRRRWVPSTIANIMDLLMDSKRTIEIN 902


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 252 TAASRCSLPSPSAAHSYVSHSYRWGLPLLADLVDIILVSARVLHIS 115
           +AAS     +P   + + +   RW    +A+++D+++ S R + I+
Sbjct: 857 SAASDAYTHAPEGFNEFYNQRRRWVPSTIANIMDLLMDSKRTIEIN 902


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 570 LPLDTPNVRSWGSTSLGPSALQHELLPFSIRYLRASLIRALDLEGAIEV 424
           +PL +P  R + +      +  +++LPF ++    S  RA+D+    EV
Sbjct: 403 IPL-SPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEV 450


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 558 CRVGDQIYQVGENWTSTENLCET 626
           C   ++ Y+    WTS++N C T
Sbjct: 673 CFYENKFYRQEAQWTSSDNPCTT 695



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 513 QKVPGKCC 536
           +KVPG+CC
Sbjct: 722 EKVPGECC 729


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 285 PAGLAVPVAARTAASRCSLPSPSAA 211
           P G+A+P     AA+   LP  +AA
Sbjct: 120 PVGVALPPTLPAAAAAALLPPQTAA 144


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 270 VPVAARTAASRCSLPSPSAAHSYVSHSYR 184
           +P A +T+ ++C+      A + + H Y+
Sbjct: 66  LPDALKTSCAKCTDKQKQGAKTVIQHLYK 94


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 497 SSC*RAEGPREVLPQDRT 550
           ++C + E PR+VLP  +T
Sbjct: 87  NNCDKLEKPRKVLPNFKT 104


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 285 PAGLAVPVAARTAASRCSLPSPSAAHSYVSHSYR 184
           P  L VP+  RTA++  S  + S + S    S R
Sbjct: 195 PLPLLVPIPQRTASTASSASNYSPSQSPEPESVR 228


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 251 VRAATGTASPAGNTSRLK 304
           VRA T  A+PA N  + K
Sbjct: 317 VRAKTQNATPANNNDKRK 334


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 251 VRAATGTASPAGNTSRLK 304
           VRA T  A+PA N  + K
Sbjct: 317 VRAKTQNATPANNNDKRK 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,444
Number of Sequences: 336
Number of extensions: 2857
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)