Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30245
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    31   0.19 
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   1.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.0  
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.2  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 585 PGISDLPLDTPNVRSWGSTSLGPSALQHELLPFSI 481
           PGIS  P    N+  W  T  GPS   +E L F I
Sbjct: 46  PGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKI 80


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = -2

Query: 527 PWDLLLFSTNCFRSASDISGQVSFELWTWRVPLRFT-QVKFVQKSEDVHFSPIGFSSPST 351
           P +L +   NC   A   S QV  E+W+       T +    +    V FSP      S 
Sbjct: 190 PSELAILIVNCLWEA--FSPQV-MEVWSKFTRFSSTVEPSRAETKRTVQFSPQYRVLLSL 246

Query: 350 TQATGSHLPQHWPLSASAGTYFQP 279
               G+H P +W +  +   YF P
Sbjct: 247 LVGEGNHEPINWDIENAIQKYFNP 270


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 198 SHSYRWGLPLLADLVDIILVSARVLHISG 112
           SHSY+W + +   ++ I++  A  ++ SG
Sbjct: 101 SHSYKWWIVIQVSVITIVVTFASSVYSSG 129


>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 514 RRSQGSAAPRSNVRRVEWEIRY 579
           R+ QGS + +S V+ ++W+I Y
Sbjct: 170 RQEQGSKSMQSRVKPMDWKILY 191


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 529 FPGTFCSSARTASVQHP 479
           F GTFC++ R ++  HP
Sbjct: 554 FNGTFCATIRASNTPHP 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,447
Number of Sequences: 5004
Number of extensions: 44384
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)