BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30245 (639 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_02_0044 - 10913591-10913720,10914268-10914572,10915191-109153... 30 1.8 02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 30 1.8 01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318 30 1.8 02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965... 29 2.4 12_01_0794 + 7285100-7285369,7285931-7286338 28 5.4 03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 28 5.4 02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160... 28 7.2 02_02_0396 - 9756993-9757540,9757590-9757809,9757929-9758046,975... 28 7.2 01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333... 28 7.2 07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 27 9.5 01_06_0177 - 27236919-27237099,27237330-27237371,27237713-272380... 27 9.5 >06_02_0044 - 10913591-10913720,10914268-10914572,10915191-10915391, 10916620-10917042 Length = 352 Score = 29.9 bits (64), Expect = 1.8 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +3 Query: 354 GWRGEANRREVDVLGLLHELHLREPQWHPPSPK 452 G GE++ + G+ L + EP WHPP P+ Sbjct: 255 GLTGESSAGDYQDCGVSPVLLMGEPPWHPPGPE 287 >02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074, 20921184-20921263,20922759-20922875,20923089-20923136, 20923509-20923601,20923881-20923958,20924114-20924218, 20924543-20925212,20925253-20925350,20925887-20925963, 20926035-20926117,20926208-20926287,20927060-20927139, 20927698-20927743,20928709-20929181,20929234-20929579 Length = 2139 Score = 29.9 bits (64), Expect = 1.8 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Frame = +1 Query: 340 VACVVDGEEKPIGEKWTSSDFCTNFTCV--NLNGTLQVQSSNETCPEISD 483 VAC DG P W D C + C+ L + ++ TC E D Sbjct: 1227 VACKTDGASVPPAPAWVCCDDCEKWRCIPTELADKISKENLRWTCKENED 1276 >01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318 Length = 878 Score = 29.9 bits (64), Expect = 1.8 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 524 REVLPQD-RTLGVSSGRSDIPGRRELDVDRELVRDYRCV 637 R+ LP D L V S R+D+P + DV + L+ +RCV Sbjct: 113 RDGLPDDMEVLYVGSLRADVPSAEQDDVAQALLDRFRCV 151 >02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926, 9651113-9651334,9651422-9651495,9653042-9653661, 9653810-9653965,9655250-9655347,9655443-9655534, 9655891-9655977 Length = 735 Score = 29.5 bits (63), Expect = 2.4 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -1 Query: 237 CSLPSPSAAHSYVSHSYRWGLPLLA--DLVDIILVSARVLHISGQDA 103 CSL SY+ Y+ LP +A DL D ++V V ++ G +A Sbjct: 609 CSLDPQEDCKSYMGKLYQLNLPSIAVPDLKDSVIVWRTVTNVGGSEA 655 >12_01_0794 + 7285100-7285369,7285931-7286338 Length = 225 Score = 28.3 bits (60), Expect = 5.4 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Frame = +1 Query: 274 QPGWKYVPAEADSGQCCGKCEPVACVVDGEEKPIGEKWTSSDFCTNFT---CVNLNGTLQ 444 QP VP D G PVA V EE G SS N CVN + + Sbjct: 124 QPTVVVVPTIIDGGSTGAAATPVAVAVVAEETKKGGTIVSSGPGGNMVAVPCVNCHLLVM 183 Query: 445 VQSSNETCP 471 + S+ +CP Sbjct: 184 LCKSSPSCP 192 >03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009, 5344297-5344399,5345152-5345234,5345271-5346089, 5346189-5346338,5346420-5346797 Length = 583 Score = 28.3 bits (60), Expect = 5.4 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2 Query: 368 FSSPSTTQATGSHLPQHWPL 309 +S P+ + T HLP +WPL Sbjct: 50 YSGPNLPEVTCKHLPSYWPL 69 >02_05_0579 + 30114127-30114177,30114691-30115386,30115883-30116083, 30116354-30116658,30116944-30117073 Length = 460 Score = 27.9 bits (59), Expect = 7.2 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 354 GWRGEANRREVDVLGLLHELHLREPQWHPPSPK 452 G GE++ G+ + + EP WHPP P+ Sbjct: 363 GLTGESSAGYFQDCGVSSMILMGEPPWHPPGPE 395 >02_02_0396 - 9756993-9757540,9757590-9757809,9757929-9758046, 9758156-9758431,9758569-9758609 Length = 400 Score = 27.9 bits (59), Expect = 7.2 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = -1 Query: 237 CSLPSPSAAHSYVSHSYRWGLPLLA--DLVDIILVSARVLHISGQD 106 C+L SYV Y+ LP +A DL D + V V ++ G++ Sbjct: 274 CTLGPKDDCESYVGQLYQLNLPSIAVPDLKDSVTVWRTVTNVGGEE 319 >01_07_0226 + 42130300-42131430,42131530-42131715,42133244-42133345, 42133425-42133481,42133563-42133658,42133736-42133828, 42133945-42134064,42134155-42134187,42134266-42134316, 42135129-42135191 Length = 643 Score = 27.9 bits (59), Expect = 7.2 Identities = 15/58 (25%), Positives = 24/58 (41%) Frame = +2 Query: 113 PEICSTRADTRIMSTRSARSGSPHRYECETYECAADGDGKLQRLAAVRAATGTASPAG 286 PE+ + T+ + T+ S R E A+DG G + ++A SP G Sbjct: 142 PELVMDLSHTKELETKPTYDASQSREEASAAASASDGQGDDKERGDLQAVEAYGSPPG 199 >07_03_1003 + 23239829-23240121,23240257-23240349,23240785-23240993, 23241585-23241729,23241809-23241881,23242165-23242311, 23242411-23242536,23242653-23242712 Length = 381 Score = 27.5 bits (58), Expect = 9.5 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +3 Query: 3 ALSGAGPAATCAVSACPAVVSSELLCYSRAPCPSHPARRYAAR 131 A G P+AT A ++CPA + RA S A R AR Sbjct: 18 ARRGTAPSATAAAASCPASSARRTTWRPRARLSSGNAARARAR 60 >01_06_0177 - 27236919-27237099,27237330-27237371,27237713-27238024, 27238848-27239218 Length = 301 Score = 27.5 bits (58), Expect = 9.5 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 460 ETCPEISDAERKQFVLKSRRSQGSAAPRSNVRR 558 E E+S+A +K +KSRR + AA R +++ Sbjct: 243 EVHEEVSEARQKASTMKSRRQEQEAARREKLKQ 275 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,440,518 Number of Sequences: 37544 Number of extensions: 380495 Number of successful extensions: 1600 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1600 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1573040476 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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