Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30245
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0044 - 10913591-10913720,10914268-10914572,10915191-109153...    30   1.8  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    30   1.8  
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318     30   1.8  
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965...    29   2.4  
12_01_0794 + 7285100-7285369,7285931-7286338                           28   5.4  
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534...    28   5.4  
02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160...    28   7.2  
02_02_0396 - 9756993-9757540,9757590-9757809,9757929-9758046,975...    28   7.2  
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333...    28   7.2  
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409...    27   9.5  
01_06_0177 - 27236919-27237099,27237330-27237371,27237713-272380...    27   9.5  

>06_02_0044 -
           10913591-10913720,10914268-10914572,10915191-10915391,
           10916620-10917042
          Length = 352

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 354 GWRGEANRREVDVLGLLHELHLREPQWHPPSPK 452
           G  GE++  +    G+   L + EP WHPP P+
Sbjct: 255 GLTGESSAGDYQDCGVSPVLLMGEPPWHPPGPE 287


>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +1

Query: 340  VACVVDGEEKPIGEKWTSSDFCTNFTCV--NLNGTLQVQSSNETCPEISD 483
            VAC  DG   P    W   D C  + C+   L   +  ++   TC E  D
Sbjct: 1227 VACKTDGASVPPAPAWVCCDDCEKWRCIPTELADKISKENLRWTCKENED 1276


>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
          Length = 878

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 524 REVLPQD-RTLGVSSGRSDIPGRRELDVDRELVRDYRCV 637
           R+ LP D   L V S R+D+P   + DV + L+  +RCV
Sbjct: 113 RDGLPDDMEVLYVGSLRADVPSAEQDDVAQALLDRFRCV 151


>02_02_0392 -
           9649858-9650405,9650499-9650670,9650788-9650926,
           9651113-9651334,9651422-9651495,9653042-9653661,
           9653810-9653965,9655250-9655347,9655443-9655534,
           9655891-9655977
          Length = 735

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 237 CSLPSPSAAHSYVSHSYRWGLPLLA--DLVDIILVSARVLHISGQDA 103
           CSL       SY+   Y+  LP +A  DL D ++V   V ++ G +A
Sbjct: 609 CSLDPQEDCKSYMGKLYQLNLPSIAVPDLKDSVIVWRTVTNVGGSEA 655


>12_01_0794 + 7285100-7285369,7285931-7286338
          Length = 225

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = +1

Query: 274 QPGWKYVPAEADSGQCCGKCEPVACVVDGEEKPIGEKWTSSDFCTNFT---CVNLNGTLQ 444
           QP    VP   D G       PVA  V  EE   G    SS    N     CVN +  + 
Sbjct: 124 QPTVVVVPTIIDGGSTGAAATPVAVAVVAEETKKGGTIVSSGPGGNMVAVPCVNCHLLVM 183

Query: 445 VQSSNETCP 471
           +  S+ +CP
Sbjct: 184 LCKSSPSCP 192


>03_02_0061 +
           5342338-5342401,5343025-5343131,5343962-5344009,
           5344297-5344399,5345152-5345234,5345271-5346089,
           5346189-5346338,5346420-5346797
          Length = 583

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 368 FSSPSTTQATGSHLPQHWPL 309
           +S P+  + T  HLP +WPL
Sbjct: 50  YSGPNLPEVTCKHLPSYWPL 69


>02_05_0579 +
           30114127-30114177,30114691-30115386,30115883-30116083,
           30116354-30116658,30116944-30117073
          Length = 460

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 354 GWRGEANRREVDVLGLLHELHLREPQWHPPSPK 452
           G  GE++       G+   + + EP WHPP P+
Sbjct: 363 GLTGESSAGYFQDCGVSSMILMGEPPWHPPGPE 395


>02_02_0396 -
           9756993-9757540,9757590-9757809,9757929-9758046,
           9758156-9758431,9758569-9758609
          Length = 400

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 237 CSLPSPSAAHSYVSHSYRWGLPLLA--DLVDIILVSARVLHISGQD 106
           C+L       SYV   Y+  LP +A  DL D + V   V ++ G++
Sbjct: 274 CTLGPKDDCESYVGQLYQLNLPSIAVPDLKDSVTVWRTVTNVGGEE 319


>01_07_0226 +
           42130300-42131430,42131530-42131715,42133244-42133345,
           42133425-42133481,42133563-42133658,42133736-42133828,
           42133945-42134064,42134155-42134187,42134266-42134316,
           42135129-42135191
          Length = 643

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 113 PEICSTRADTRIMSTRSARSGSPHRYECETYECAADGDGKLQRLAAVRAATGTASPAG 286
           PE+    + T+ + T+     S  R E      A+DG G  +    ++A     SP G
Sbjct: 142 PELVMDLSHTKELETKPTYDASQSREEASAAASASDGQGDDKERGDLQAVEAYGSPPG 199


>07_03_1003 +
           23239829-23240121,23240257-23240349,23240785-23240993,
           23241585-23241729,23241809-23241881,23242165-23242311,
           23242411-23242536,23242653-23242712
          Length = 381

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 3   ALSGAGPAATCAVSACPAVVSSELLCYSRAPCPSHPARRYAAR 131
           A  G  P+AT A ++CPA  +       RA   S  A R  AR
Sbjct: 18  ARRGTAPSATAAAASCPASSARRTTWRPRARLSSGNAARARAR 60


>01_06_0177 -
           27236919-27237099,27237330-27237371,27237713-27238024,
           27238848-27239218
          Length = 301

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 460 ETCPEISDAERKQFVLKSRRSQGSAAPRSNVRR 558
           E   E+S+A +K   +KSRR +  AA R  +++
Sbjct: 243 EVHEEVSEARQKASTMKSRRQEQEAARREKLKQ 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,440,518
Number of Sequences: 37544
Number of extensions: 380495
Number of successful extensions: 1600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)