Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30245
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58413| Best HMM Match : GIY-YIG (HMM E-Value=0.31)                  29   2.4  
SB_26505| Best HMM Match : DUF1299 (HMM E-Value=0.78)                  29   3.2  
SB_32848| Best HMM Match : S-antigen (HMM E-Value=8.5e-05)             28   7.4  
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)               27   9.7  
SB_25282| Best HMM Match : rve (HMM E-Value=6.3e-12)                   27   9.7  

>SB_58413| Best HMM Match : GIY-YIG (HMM E-Value=0.31)
          Length = 366

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +2

Query: 119 ICSTRADTRIMSTRSARSGSPHRYECETYECAADGDGKLQRLAAVRAATGTASPAGNTSR 298
           +C+ R  T I S R     + HRY   T+    D     Q L A+R  T    P+ +  R
Sbjct: 124 LCNKRPSTGIPSPRLVHYETKHRYTKPTFCAIRDQAQVYQALCALRDQTQKLQPSTSPKR 183


>SB_26505| Best HMM Match : DUF1299 (HMM E-Value=0.78)
          Length = 535

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 280 GWKYVPAE--ADSGQCCGKCEPVACVVDGEEKPIGEKWTSSDFCTNFTCVNLNGT 438
           GW   P E  +++ + C +CE    + DG E  I + W+SS+  T+ T +++  T
Sbjct: 55  GWTICPGEIRSENSRDC-RCETP--LTDGGESVISDSWSSSE-VTDTTSISMEST 105


>SB_32848| Best HMM Match : S-antigen (HMM E-Value=8.5e-05)
          Length = 555

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +1

Query: 346 CVVDGEEKPIGEKWTSSDFCTNFTCVNLNGTLQVQSSNETCPEISDAERKQF--VLKSRR 519
           CV  G    +     + D+ TNF C  L G   V   N+   ++ +   KQ   + K   
Sbjct: 97  CVSYGSISIVRATMCNGDYITNFACRCLIGDFSVARRNKENAKLRETNEKQMRALKKMEE 156

Query: 520 SQGSAAPRSN 549
             G+ + + N
Sbjct: 157 KAGNTSKKFN 166


>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
          Length = 367

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 412 FTCVNLNGTLQVQS--SNETCPEISDAERKQFVLKSRRSQGSA--APRSNVRR 558
           ++CV LNGT   Q+   +  CP+    E+K  + K+ + +G    APR++  R
Sbjct: 248 YSCVKLNGTSMAQNYPPDTVCPQARIQEKKD-LEKTEQEEGCEVYAPRASCIR 299


>SB_25282| Best HMM Match : rve (HMM E-Value=6.3e-12)
          Length = 451

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 187 SMGTSTSRRPCRHYPGVCXRAAYL 116
           S G  TS RP RHYP  C R  +L
Sbjct: 174 SEGAPTSERPPRHYP-ACWRLIHL 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,035,177
Number of Sequences: 59808
Number of extensions: 396415
Number of successful extensions: 1338
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)