Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30245
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13590.1 68418.m01572 expressed protein                             33   0.21 
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea...    28   4.5  
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla...    28   4.5  
At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SD...    28   6.0  
At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative ...    27   7.9  
At1g21450.1 68414.m02682 scarecrow-like transcription factor 1 (...    27   7.9  

>At5g13590.1 68418.m01572 expressed protein 
          Length = 1190

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 422 TQVKFVQKSEDVHFSPI-GFSSPSTTQATGSHLPQHWPL 309
           T+VKF + S  +H SP+ GF  PS++   GS +  H+P+
Sbjct: 60  TRVKFEKPSSPIHSSPLAGFDIPSSSNVLGSSI--HFPM 96


>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
           family protein similar to katanin p80 subunit
           [Strongylocentrotus purpuratus] GI:3005601; contains
           Pfam profile PF00400: WD domain, G-beta repeat
          Length = 871

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 86  PRPVPFASCPEICSTRADTRIMSTRSARSGSPHRYECETYECAADG-DGKLQRLAAVRAA 262
           P+P+   S      T  ++R +S+  + S SPHR    +   +A G    +   AA +  
Sbjct: 484 PKPLGRFSATHSSDTVKESRTLSSTGSVSDSPHRVTLTSAPKSASGISTVVPNAAASKRN 543

Query: 263 TGTASPAGN 289
            G A+P  N
Sbjct: 544 FGKANPKAN 552


>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 366 EANRREVDVLGLLHELHLREPQWHPPSPKLE*DLP 470
           E + + ++V+GL      REPQW   S     DLP
Sbjct: 130 EHHVKHIEVIGLKEYSETREPQWRQASRSRPDDLP 164


>At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SDR)
           family protein contains Pfam profile
           PF00106:oxidoreductase, short chain
           dehydrogenase/reductase family
          Length = 298

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  PRALRILPGDMQHAXRHQDNVYKVGEKW 174
           P   +++P ++++  R    +YKVGEKW
Sbjct: 207 PGMSKLVPEEIENKTREYMPLYKVGEKW 234


>At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative
           similar to ceramide glucosyltransferase (GI:14718995)
           [Gossypium arboreum]; weak similarity to Ceramide
           glucosyltransferase  (Glucosylceramide synthase) (GCS)
           (UDP-glucose:N-acylsphingosine D-glucosyltransferase)
           (GLCT-1) (Swiss-Prot:Q16739) [Homo sapiens]
          Length = 519

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 255 RTAASRCSLPSPSAAHSYVSHSYRWGLPLLADLVDIIL--VSARVLHISGQDAKGTGRGY 82
           R     C++ SP A    ++ +Y WGL  +A LVD  L  +SA   H S Q    +G  Y
Sbjct: 403 RREVQLCNMLSPEAPRLSLA-TYNWGLVFVAMLVDNFLYPISAFRSHFS-QSINWSGIRY 460

Query: 81  SI 76
            +
Sbjct: 461 HL 462


>At1g21450.1 68414.m02682 scarecrow-like transcription factor 1
           (SCL1) identical to scarecrow-like 1 GB:AAF21043
           GI:6644390 from [Arabidopsis thaliana]
          Length = 593

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 535 QHFPGTFCSSARTASVQHPISPGKSHSSFG 446
           Q +   F  S     VQHPI  G S SSFG
Sbjct: 68  QSYEKYFLDSPTDEFVQHPIGSGASVSSFG 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,759
Number of Sequences: 28952
Number of extensions: 259700
Number of successful extensions: 899
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)