Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30244
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 129 5e-31
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 124 1e-29
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 100 3e-22
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 30 0.43
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.76
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 4.0
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 27 4.0
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.3
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 9.3
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 129 bits (311), Expect = 5e-31
Identities = 55/87 (63%), Positives = 72/87 (82%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T G PN K+VREL+YKRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI+TVG
Sbjct: 140 YVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVG 199
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKRPF 770
FK A+NFLWPFKL++P GGWR+R F
Sbjct: 200 PNFKQAANFLWPFKLSSPLGGWRERKF 226
Score = 72.9 bits (171), Expect = 5e-14
Identities = 34/59 (57%), Positives = 41/59 (69%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AE Y EYR ER++I LAR+AR GNY+VP E KL FV+RIRGIN + PK+ K L
Sbjct: 55 AEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113
Score = 46.0 bits (104), Expect = 6e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ RK++QL RL QINNG+FV+ NKA ML++ E
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVE 138
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 124 bits (299), Expect = 1e-29
Identities = 52/87 (59%), Positives = 71/87 (81%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L K++I+ +EDLIHEI+TVG
Sbjct: 141 YVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVG 200
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKRPF 770
FK A+NF+WPF+L++P GGWR R F
Sbjct: 201 PNFKQAANFIWPFQLSSPLGGWRDRKF 227
Score = 73.7 bits (173), Expect = 3e-14
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AE Y EYR ER++I L R+AR GNYYVP E KL FVIRIRGIN + PK+ K L
Sbjct: 56 AESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ RK++QL RL QINNGVFV+ NKAT ML++ E
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVE 139
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 100 bits (239), Expect = 3e-22
Identities = 41/75 (54%), Positives = 58/75 (77%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+ G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG
Sbjct: 139 YVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVG 198
Query: 690 EKFKYASNFLWPFKL 734
FK + FLWPF L
Sbjct: 199 SHFKEVTKFLWPFTL 213
Score = 61.7 bits (143), Expect = 1e-10
Identities = 28/59 (47%), Positives = 38/59 (64%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+ + PK K L
Sbjct: 54 AETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAELTLLRDTP 531
++RKVL+L RL +INN VFVR NKA MLRI E ++ P
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 531 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 707
N KSV + G L+G +I I+ + ++ R+ VE +L H++ + K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201
Query: 708 SNFLWPFK 731
S F PF+
Sbjct: 202 SGFFGPFR 209
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.76
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 760 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 626
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 704 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY 555
+L +F+ +D M L T+N + +L +A W TL G + F Y
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYY 366
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 206 AKEAFFCHQEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGN 337
AKE FF HQ E L+ ++ +K +R +E DE+ + + N
Sbjct: 47 AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +2
Query: 233 EEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKS 412
E + NL+ V+EY +DEI + N N E + + + + Q+S +
Sbjct: 479 EIKSNLEAKSNDVEEYDAFYKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQ 538
Query: 413 VKFCN 427
+KF +
Sbjct: 539 LKFAS 543
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 355
A Q ++ + +RL N+ N+++PGE
Sbjct: 310 ATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 259 SPLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 104
S LK + L +E + + + NL+V+ +L + T G FL SS P+
Sbjct: 237 SHLKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,725
Number of Sequences: 5004
Number of extensions: 62801
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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