Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30244
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   128   5e-30
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   122   2e-28
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    97   1e-20
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    30   2.4  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    29   5.5  
02_03_0221 - 16554910-16555560                                         29   5.5  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  128 bits (309), Expect = 5e-30
 Identities = 54/85 (63%), Positives = 69/85 (81%)
 Frame = +3

Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
           Y+  GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG
Sbjct: 136 YVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVG 195

Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
             FK A+NFLWPFKL  P GG +K+
Sbjct: 196 PHFKEANNFLWPFKLKAPLGGLKKK 220



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 29/59 (49%), Positives = 42/59 (71%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
           A+QY +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L
Sbjct: 51  AKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  E
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVE 134


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  122 bits (295), Expect = 2e-28
 Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 6/91 (6%)
 Frame = +3

Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIH 671
           Y+  GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+       L KH+IIC+EDL+H
Sbjct: 135 YVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVH 194

Query: 672 EIFTVGEKFKYASNFLWPFKLNNPTGGWRKR 764
           EI TVG  FK A+NFLWPFKL  P GG +K+
Sbjct: 195 EIMTVGPHFKEANNFLWPFKLKAPLGGLKKK 225



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
           A+QY +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L
Sbjct: 50  AKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  E
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 2/89 (2%)
 Frame = +3

Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
           +IT G+PNLK+V++L+YK+G   L  +  P+TSN ++EK L ++ IIC+EDL+HEI +VG
Sbjct: 138 FITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVG 197

Query: 690 EKFKYASNFLWPFKLNNPTG--GWRKRPF 770
             F+ ASNFL PFKL  P      +K+PF
Sbjct: 198 PHFREASNFLMPFKLKCPERRLQMKKKPF 226


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -2

Query: 764  SLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFME---PLLNNAVGSD 600
            +L+ +  W+    G     ++LEL  N+E + D+VL  +  + M     LL+N +GSD
Sbjct: 1128 ALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVMPKIYSLLSNLIGSD 1185


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 167 EERGSSH*EITGYAKEAFFCHQEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRG 334
           + RG +H EIT    +A     ++    +  ++ V   RIKER E R   +  +RG
Sbjct: 193 KSRGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRTDGKRNSRG 248


>02_03_0221 - 16554910-16555560
          Length = 216

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 271 DVLFSPLKISLFFLMAEERLFSVTCNLLVRRASL--LLRCLSTDSGTAGSFLLSSFPLT 101
           DVL   L  ++F  +A      V C   V   +   LL  +   +G AGSFL + FP T
Sbjct: 146 DVLHGALSFAVFLAVAMVDRNVVACFYPVESPATRQLLAAVPMAAGAAGSFLFAMFPST 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,216,889
Number of Sequences: 37544
Number of extensions: 399015
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)