Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30244
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      139   2e-33
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    31   1.1  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    29   5.6  
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  139 bits (337), Expect = 2e-33
 Identities = 63/85 (74%), Positives = 72/85 (84%)
 Frame = +3

Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
           YI  GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L KH IICVEDLIHEIFTVG
Sbjct: 136 YIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVG 195

Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
           E FK ASNFLWPFKL++P GG+RK+
Sbjct: 196 EHFKEASNFLWPFKLSSPKGGFRKK 220



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +2

Query: 227 HQEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 406
           H + +   + AE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSP
Sbjct: 41  HGKRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSP 100

Query: 407 KSVKFCNCL 433
           K  K    L
Sbjct: 101 KVRKILQLL 109



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI +
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQ 134


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 239 EGNLQGAEQYVKEYRI--KERDEIRLARQARNRGNYYVP 349
           E +  G +   ++YR   K RD   +AR+ R+RG YY+P
Sbjct: 465 ESSSDGVQSISEKYRSSGKIRDTSSIARETRSRGPYYLP 503


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 312 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 449
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -2

Query: 785 PRRHNEWSLAPTTSWIVQFEGPQEITRV-LELFSNSEDLMDEVLNTDNVVFMEPLLNNAV 609
           P  HN  +  P  + ++    P+ ++ + +E+F      +DE +    V   E +LN   
Sbjct: 28  PTAHNGAN-NPRWNKLIASTLPKGVSTIYVEIFDERSFSVDERVAWGLVQIREDVLNGET 86

Query: 608 GSDWYTLSTQLGE 570
             DWY+LS + GE
Sbjct: 87  IDDWYSLSGKQGE 99


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 204  TLKRRSSAIKKKREIFKGLNSTSRNTASRNVMKSD 308
            T+ RR   +KKKRE+     S SRN     V +SD
Sbjct: 949  TIDRRRKRLKKKREVTDSFRSYSRNEIFFWVTQSD 983


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 730 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEV 602
           LKGH K    L+++P V  + + +S    +CLW + S +  +V
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISSGISKDV 281


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 666 IHEIFTVGEKFKYASNFLWPFKLNN 740
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,482,889
Number of Sequences: 59808
Number of extensions: 470786
Number of successful extensions: 1083
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)