Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30244
(786 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 128 4e-30
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 128 4e-30
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 127 7e-30
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 127 7e-30
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 127 7e-30
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 126 2e-29
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 88 5e-18
At5g52200.1 68418.m06479 expressed protein 30 2.0
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 30 2.0
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 2.6
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 2.6
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 3.5
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 3.5
At2g44735.1 68415.m05566 expressed protein ; expression supporte... 29 4.6
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co... 28 8.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 128 bits (309), Expect = 4e-30
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 138 YVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVG 197
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
FK A+NFLWPF+L P GG +K+
Sbjct: 198 PHFKEANNFLWPFQLKAPLGGLKKK 222
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 AEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKATVNMLR E
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVE 136
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 128 bits (309), Expect = 4e-30
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 133 YVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVG 192
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
FK A+NFLWPF+L P GG +K+
Sbjct: 193 PHFKEANNFLWPFQLKAPLGGLKKK 217
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 48 AEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKATVNMLR E
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVE 131
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 127 bits (307), Expect = 7e-30
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 135 YVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVG 194
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
FK A+NFLWPF+L P GG +K+
Sbjct: 195 PHFKEANNFLWPFQLKAPLGGMKKK 219
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
A+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 50 AKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 127 bits (307), Expect = 7e-30
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 135 YVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVG 194
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
FK A+NFLWPF+L P GG +K+
Sbjct: 195 PHFKEANNFLWPFQLKAPLGGMKKK 219
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
A+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 50 AKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 127 bits (307), Expect = 7e-30
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 135 YVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVG 194
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
FK A+NFLWPF+L P GG +K+
Sbjct: 195 PHFKEANNFLWPFQLKAPLGGMKKK 219
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
A+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 50 AKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 126 bits (304), Expect = 2e-29
Identities = 56/85 (65%), Positives = 68/85 (80%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC EDLIHEI TVG
Sbjct: 133 YVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVG 192
Query: 690 EKFKYASNFLWPFKLNNPTGGWRKR 764
FK A+NFLWPF+L P GG +K+
Sbjct: 193 PHFKEANNFLWPFQLKAPLGGLKKK 217
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 48 AEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVE 131
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 88.2 bits (209), Expect = 5e-18
Identities = 37/78 (47%), Positives = 55/78 (70%)
Frame = +3
Query: 510 YIT*GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 689
Y+T GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I+ +EDL++EI VG
Sbjct: 137 YVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVG 196
Query: 690 EKFKYASNFLWPFKLNNP 743
+ F+ FL P KLN P
Sbjct: 197 DHFREVMRFLGPLKLNKP 214
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/68 (30%), Positives = 41/68 (60%)
Frame = +2
Query: 230 QEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 409
+++ +++ E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK
Sbjct: 43 KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPK 102
Query: 410 SVKFCNCL 433
+ + N L
Sbjct: 103 TKRILNNL 110
>At5g52200.1 68418.m06479 expressed protein
Length = 191
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 209 KEAFFCHQEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYY 343
+EA Q+EEG+ G + +R DE R ++ R+ G++Y
Sbjct: 98 EEADPMDQDEEGSGSGKNERFNAHRKAHYDEFRKVKELRSSGSFY 142
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 730 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGIRCPLSLA 572
LKGH+K + L FS + I + S +C WS+ + + + I+ P A
Sbjct: 900 LKGHQKRITGLAFSTALNI-LVSSGADAQICFWSIDTWEKRKSVAIQMPAGKA 951
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 760 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 626
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 690 LRNPKIPLCTMIGHSKTVSYVKFVDSSTL--VSSSTDNTLKLWDL 732
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 246 IFKGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 410
I G + T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 404 IRSGASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 760 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 626
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 760 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 626
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At2g44735.1 68415.m05566 expressed protein ; expression supported
by MPSS
Length = 248
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 500 SPSLHYLGIPQLKECP*VSIQTW-IRQAEWTTY 595
SPS + QL+ C V I TW + EWTT+
Sbjct: 138 SPSCMVISYTQLRSCGSVLIDTWRPGETEWTTH 170
>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 695
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 755 PTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVV-FMEPLLNNA 612
P T W ++ P+E++ +LE LM +LNT + + E L+N+A
Sbjct: 136 PKTVW---YQDPEEVSSLLEAVDRVSKLMGLLLNTKSCLDHHESLINHA 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,895
Number of Sequences: 28952
Number of extensions: 325187
Number of successful extensions: 912
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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