BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30243X (549 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 62 4e-11 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 59 4e-10 SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 27 1.4 SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 1.4 SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4 SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 2.4 SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 26 3.2 SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 26 3.2 SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 4.2 SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 25 5.6 SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 5.6 SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 9.7 >SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|Schizosaccharomyces pombe|chr 1|||Manual Length = 1199 Score = 62.5 bits (145), Expect = 4e-11 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Frame = -3 Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSIL-HQAGXXXXXX 329 RL+ S+EE ILA KL + KV QAG + KST +R+ FL+S+L ++ G Sbjct: 859 RLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDE 918 Query: 328 XXVPDDDLINAMIARSEEELEIFKQ 254 DDD +N ++AR ++EL +FKQ Sbjct: 919 KGELDDDELNEILARGDDELRLFKQ 943 Score = 44.4 bits (100), Expect = 1e-05 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = -2 Query: 257 TIDLERK----KTEKHSRLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQR 90 T DLER+ K ++ RLI+ SELP++ +++ E + L ++E LGRG+R+R Sbjct: 945 TEDLERESPYGKNKEKERLIQVSELPEFYQREEPEKTTD-------LLQEEPLGRGARRR 997 Query: 89 KEVDYTDSLTEKEWLKAID 33 V Y +++ + +W+ +D Sbjct: 998 TPVVYDEAVRDAQWMAEMD 1016 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 59.3 bits (137), Expect = 4e-10 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = -3 Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSIL-HQAGXXXXXX 329 RL+ S+EE IL+ KL L KV QAG + KST +R+ FL+S+L H Sbjct: 1310 RLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLT 1369 Query: 328 XXVPDDDLINAMIARSEEELEIFKQ 254 DD +N +I+R++EEL +FK+ Sbjct: 1370 YGELQDDELNELISRTDEELVLFKK 1394 Score = 25.4 bits (53), Expect = 5.6 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = -2 Query: 218 RLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVDYTDSLTEKEWLKA 39 RL+ +ELPD+ + D ED+ L R R+R + YT+ LT E L Sbjct: 1413 RLLTVNELPDFYKVEVDSFAVQSSSEL----EDQYLERKRRRRNSISYTE-LTLDE-LNT 1466 Query: 38 ID 33 +D Sbjct: 1467 VD 1468 >SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 387 Score = 27.5 bits (58), Expect = 1.4 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 Query: 260 QTIDLERKKTEKHSRLIEESELPDWLVKDDD 168 QTI K T +HS L + S + W V+ ++ Sbjct: 53 QTISASHKWTREHSGLFDVSHMVQWFVRGEN 83 >SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccharomyces pombe|chr 1|||Manual Length = 944 Score = 27.5 bits (58), Expect = 1.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQ 368 RL+ N++EE I +KLTL +T QK + + LQ Sbjct: 886 RLITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKSLQ 931 >SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 75 Score = 26.6 bits (56), Expect = 2.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 113 GSRLHLNNSSLGPYCRQLHHRPSQANLVVL 202 GSRLH+ SSL YC + A +L Sbjct: 4 GSRLHIYGSSLADYCLNAKYGQRYATFSIL 33 >SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 590 Score = 26.6 bits (56), Expect = 2.4 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%) Frame = -2 Query: 191 DWLVKDDDEVVCNKGQGWNYLDEDET------LGR-GSRQRKEVDYTDSLTEKE 51 D L DDE+ N+ QG + ++ DET G+ G Q ++VD S E E Sbjct: 460 DSLADSDDEIFLNRNQGIDEVEFDETKFYDLLKGKDGKYQNQDVDEFSSGNEDE 513 >SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pombe|chr 2|||Manual Length = 992 Score = 26.2 bits (55), Expect = 3.2 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 242 VPNLLFEYLQLFFRTRYHCVNEIVIGNFIFFLFNNSGLMQNTLQ 373 +P+L +E L F R+ YH N ++ F L +N + T + Sbjct: 229 IPDLKYEELVKFHRSHYHPSNAKILSYGSFPLEDNLSALSETFR 272 >SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 295 Score = 26.2 bits (55), Expect = 3.2 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -2 Query: 218 RLIEESELPDWL-VKDDDEVVCNKGQGWNYLDEDET 114 +LI+ S L + DDDE +K WNY ++ ET Sbjct: 164 QLIDHSVFDQLLEMDDDDEHEFSKSIVWNYFEQAET 199 >SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr 2|||Manual Length = 905 Score = 25.8 bits (54), Expect = 4.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 460 PGSKLTLAEKVTQAGMSNQKSTGS 389 PG KLTLAEKV + + N + + S Sbjct: 53 PGQKLTLAEKVLYSHLVNPEESFS 76 Score = 24.6 bits (51), Expect = 9.7 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 514 PCPRLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQ 377 PC M + +E GS L L + +G+ NQK S +QQ Sbjct: 760 PCKHTMSKDQIE---FFKAGSALNLIREKAHSGVVNQKVIDSIKQQ 802 >SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 464 Score = 25.4 bits (53), Expect = 5.6 Identities = 8/26 (30%), Positives = 16/26 (61%) Frame = -2 Query: 248 LERKKTEKHSRLIEESELPDWLVKDD 171 ++ K + + L ++ +LP W+ KDD Sbjct: 260 IDPKDLQTIASLYDDQQLPSWITKDD 285 >SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 749 Score = 25.4 bits (53), Expect = 5.6 Identities = 11/36 (30%), Positives = 23/36 (63%) Frame = +2 Query: 242 VPNLLFEYLQLFFRTRYHCVNEIVIGNFIFFLFNNS 349 V +L+F L + F T + ++ I++G ++ LF+N+ Sbjct: 29 VLSLIFYILYICFGTTSYILSGIILGAYVNSLFHNN 64 >SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces pombe|chr 3|||Manual Length = 761 Score = 24.6 bits (51), Expect = 9.7 Identities = 12/37 (32%), Positives = 17/37 (45%) Frame = -3 Query: 457 GSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAG 347 G LA K+ G+S + QQ S+LH +G Sbjct: 14 GKSDDLANKLAAFGLSQPNHSSLSEQQSTNSLLHGSG 50 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,969,467 Number of Sequences: 5004 Number of extensions: 36769 Number of successful extensions: 133 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 130 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 227943826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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