Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30243X
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 62 4e-11
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 59 4e-10
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 27 1.4
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 1.4
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 2.4
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 26 3.2
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 26 3.2
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 4.2
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 25 5.6
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 5.6
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 9.7
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 62.5 bits (145), Expect = 4e-11
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = -3
Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSIL-HQAGXXXXXX 329
RL+ S+EE ILA KL + KV QAG + KST +R+ FL+S+L ++ G
Sbjct: 859 RLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDE 918
Query: 328 XXVPDDDLINAMIARSEEELEIFKQ 254
DDD +N ++AR ++EL +FKQ
Sbjct: 919 KGELDDDELNEILARGDDELRLFKQ 943
Score = 44.4 bits (100), Expect = 1e-05
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = -2
Query: 257 TIDLERK----KTEKHSRLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQR 90
T DLER+ K ++ RLI+ SELP++ +++ E + L ++E LGRG+R+R
Sbjct: 945 TEDLERESPYGKNKEKERLIQVSELPEFYQREEPEKTTD-------LLQEEPLGRGARRR 997
Query: 89 KEVDYTDSLTEKEWLKAID 33
V Y +++ + +W+ +D
Sbjct: 998 TPVVYDEAVRDAQWMAEMD 1016
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 59.3 bits (137), Expect = 4e-10
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -3
Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSIL-HQAGXXXXXX 329
RL+ S+EE IL+ KL L KV QAG + KST +R+ FL+S+L H
Sbjct: 1310 RLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLT 1369
Query: 328 XXVPDDDLINAMIARSEEELEIFKQ 254
DD +N +I+R++EEL +FK+
Sbjct: 1370 YGELQDDELNELISRTDEELVLFKK 1394
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -2
Query: 218 RLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVDYTDSLTEKEWLKA 39
RL+ +ELPD+ + D ED+ L R R+R + YT+ LT E L
Sbjct: 1413 RLLTVNELPDFYKVEVDSFAVQSSSEL----EDQYLERKRRRRNSISYTE-LTLDE-LNT 1466
Query: 38 ID 33
+D
Sbjct: 1467 VD 1468
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 260 QTIDLERKKTEKHSRLIEESELPDWLVKDDD 168
QTI K T +HS L + S + W V+ ++
Sbjct: 53 QTISASHKWTREHSGLFDVSHMVQWFVRGEN 83
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQ 368
RL+ N++EE I +KLTL +T QK + + LQ
Sbjct: 886 RLITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKSLQ 931
>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 75
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 113 GSRLHLNNSSLGPYCRQLHHRPSQANLVVL 202
GSRLH+ SSL YC + A +L
Sbjct: 4 GSRLHIYGSSLADYCLNAKYGQRYATFSIL 33
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = -2
Query: 191 DWLVKDDDEVVCNKGQGWNYLDEDET------LGR-GSRQRKEVDYTDSLTEKE 51
D L DDE+ N+ QG + ++ DET G+ G Q ++VD S E E
Sbjct: 460 DSLADSDDEIFLNRNQGIDEVEFDETKFYDLLKGKDGKYQNQDVDEFSSGNEDE 513
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 242 VPNLLFEYLQLFFRTRYHCVNEIVIGNFIFFLFNNSGLMQNTLQ 373
+P+L +E L F R+ YH N ++ F L +N + T +
Sbjct: 229 IPDLKYEELVKFHRSHYHPSNAKILSYGSFPLEDNLSALSETFR 272
>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 218 RLIEESELPDWL-VKDDDEVVCNKGQGWNYLDEDET 114
+LI+ S L + DDDE +K WNY ++ ET
Sbjct: 164 QLIDHSVFDQLLEMDDDDEHEFSKSIVWNYFEQAET 199
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 460 PGSKLTLAEKVTQAGMSNQKSTGS 389
PG KLTLAEKV + + N + + S
Sbjct: 53 PGQKLTLAEKVLYSHLVNPEESFS 76
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 514 PCPRLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQ 377
PC M + +E GS L L + +G+ NQK S +QQ
Sbjct: 760 PCKHTMSKDQIE---FFKAGSALNLIREKAHSGVVNQKVIDSIKQQ 802
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 248 LERKKTEKHSRLIEESELPDWLVKDD 171
++ K + + L ++ +LP W+ KDD
Sbjct: 260 IDPKDLQTIASLYDDQQLPSWITKDD 285
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 242 VPNLLFEYLQLFFRTRYHCVNEIVIGNFIFFLFNNS 349
V +L+F L + F T + ++ I++G ++ LF+N+
Sbjct: 29 VLSLIFYILYICFGTTSYILSGIILGAYVNSLFHNN 64
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 457 GSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAG 347
G LA K+ G+S + QQ S+LH +G
Sbjct: 14 GKSDDLANKLAAFGLSQPNHSSLSEQQSTNSLLHGSG 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,467
Number of Sequences: 5004
Number of extensions: 36769
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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