Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30243X
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 55 4e-08
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 51 5e-07
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 50 2e-06
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 33 0.11
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 31 0.61
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 31 0.80
02_05_0227 - 26994462-26994591,26994714-26994803,26994895-269950... 30 1.4
05_07_0320 + 29235266-29235305,29235409-29236682 29 3.2
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 28 4.3
07_03_0383 - 17476271-17479228,17480466-17480750 28 5.6
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 27 7.5
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561... 27 7.5
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/83 (34%), Positives = 51/83 (61%)
Frame = -3
Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXX 326
RL V ++EE++ A+ KL +A + AG + ++ DR+++L+S+L G
Sbjct: 1413 RLETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR--GGKKEEAA 1470
Query: 325 XVPDDDLINAMIARSEEELEIFK 257
V DDD +N ++ARSE+E++IF+
Sbjct: 1471 PVLDDDALNDLLARSEDEIDIFE 1493
>05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 51.2 bits (117), Expect = 5e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = -3
Query: 502 LMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXXX 323
L+ V S+EE IL K+ + KV QAG+ N ST DR+ LQ IL +
Sbjct: 830 LVSVGSIEEEILDRAKQKMGIDAKVIQAGLFNTTSTAQDRRALLQEILRRG--TSSLGTD 887
Query: 322 VPDDDLINAMIARSEEELEIFKQ 254
+P + IN + AR++EE +F++
Sbjct: 888 IPSEREINRLAARNDEEFWLFEK 910
Score = 37.9 bits (84), Expect = 0.005
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = -2
Query: 260 QTIDLERKKTEKHS-RLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDE-TLGRGSRQRK 87
+ +D ER++ E + RL+E E+PDW+ +D + K DE + L R+RK
Sbjct: 909 EKMDEERRQRENYKPRLMEGIEVPDWVFAND--TLTEKIPA----DEPQNVLLTTKRRRK 962
Query: 86 EVDYTDSLTEKEWLKAID 33
EV Y+DS + +W+KA D
Sbjct: 963 EVVYSDSFGD-QWMKADD 979
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = -3
Query: 451 KLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXXXVPDDDLINAMIARSEEE 272
K+ +A++V AG +Q++T +R+ L+++LH VP +N MIAR+EEE
Sbjct: 1467 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQQVNRMIARTEEE 1526
Query: 271 LEIFKQ 254
+E+F Q
Sbjct: 1527 VELFDQ 1532
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = -2
Query: 263 IQTIDLERKKTEKHSRLIEESELPDWLVKD--DDEVVCNKGQGWNYLDEDETL 111
++ + LE +TEK++ L +E E+ V D ++EVVC +G N ++ +ET+
Sbjct: 4462 VKNVTLETLETEKNTMLEDEEEMEVGHVVDSCENEVVCLVKEGGNKIEFEETI 4514
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 31.1 bits (67), Expect = 0.61
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 194 PDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVD 78
PD + KD D+ K +G +Y+ +DE RG R+ D
Sbjct: 343 PDHIAKDCDQGTEQKNKGPSYVLKDENTQRGGNNRRSYD 381
>03_01_0149 -
1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 260 QTIDLERKKTEKH-SRLIEESELPDWLVKDDDEVV 159
+T D+E + TEKH + +EE ELPD + DEV+
Sbjct: 579 ETSDVEMQNTEKHNTNDLEEGELPDSHGEHVDEVI 613
>02_05_0227 -
26994462-26994591,26994714-26994803,26994895-26995022,
26995179-26995573,26995666-26995792,26995909-26995986,
26996096-26996198,26996315-26996589,26996700-26996726
Length = 450
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 209 EESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRK-EVDYTDSLTEKEWLKA 39
E +L D++V +DD+VV + Q + +E+E + + V + LT +E LKA
Sbjct: 14 EYDDLDDFIVDNDDDVVLGEEQQDEFEEEEEEQEEEEEEEEPPVGQVEILTLREQLKA 71
>05_07_0320 + 29235266-29235305,29235409-29236682
Length = 437
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 414 IPAWVTFSAKVNLEPGAAKILSSKELTGMSRGHGLQSG 527
IP+WV F+A G + S ++G R GLQ G
Sbjct: 77 IPSWVAFTANATTLCGQPAVDHSAAISGFKRLIGLQPG 114
>01_06_1556 - 38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 113 LGRGSRQRKEVDYTDSLTEKE 51
LGRG RQRK V+Y D + ++
Sbjct: 1089 LGRGKRQRKVVNYADEVENED 1109
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 405 RSLLDLTGNSFCKVFCIKPELLKRKK 328
RSL +L N KV C+K E+ K K+
Sbjct: 14 RSLGELAANEIAKVLCVKNEINKLKR 39
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 191 DWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVD 78
D + +D D+ K +G NY+ +DE R +R+ D
Sbjct: 374 DLIARDCDQRAEQKNKGPNYILKDENTQRSGNKRRSYD 411
>03_02_0099 -
5614007-5614233,5614725-5614998,5615086-5616179,
5616674-5616772,5617371-5617389
Length = 570
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 493 VNSLEERILAAPGSKLTLAE---KVTQAGMSNQKSTGSDRQQ 377
VNS R L+A G +L AE K T SN KS GS+ +Q
Sbjct: 508 VNSKRRRRLSAKGLELQQAEKGKKPTTKNKSNGKSPGSNGKQ 549
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,361
Number of Sequences: 37544
Number of extensions: 250216
Number of successful extensions: 709
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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