Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30243X
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   2e-17
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_236| Best HMM Match : QPP (HMM E-Value=1.8)                         28   4.4  
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)               28   5.8  
SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_15895| Best HMM Match : Hint (HMM E-Value=1.4013e-45)               28   5.8  

>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 44/84 (52%), Positives = 57/84 (67%)
 Frame = -3

Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXX 326
           RLM VNS+EE+ILAA   KL + EKV QAGM NQ ST S+R+ FL ++L           
Sbjct: 636 RLMTVNSVEEKILAAARYKLNVDEKVIQAGMFNQNSTSSERKAFLMALLDTENDDDEEES 695

Query: 325 XVPDDDLINAMIARSEEELEIFKQ 254
            VPDD+ +N MIARSEEE E++++
Sbjct: 696 EVPDDETVNQMIARSEEEFELYQR 719



 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 38/84 (45%), Positives = 58/84 (69%), Gaps = 8/84 (9%)
 Frame = -2

Query: 260 QTIDLERKKTE--------KHSRLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGR 105
           Q +D+ER++TE        +  RL+ ++ELP W++KDD+EV   +   W   +E++   R
Sbjct: 718 QRMDIERRRTEVRDPTTHRRRPRLMADNELPRWILKDDNEV---ERLTWEE-EEEKMFAR 773

Query: 104 GSRQRKEVDYTDSLTEKEWLKAID 33
           GSRQRK+VDY++ LTEK+WLKAI+
Sbjct: 774 GSRQRKKVDYSEHLTEKQWLKAIE 797


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 128  DEDETLGRGSRQRKEVDYTDSLTEKE 51
            DE   LG+G R RK+V+Y D+  E +
Sbjct: 1292 DEARELGKGKRIRKQVNYVDTGIEDQ 1317


>SB_236| Best HMM Match : QPP (HMM E-Value=1.8)
          Length = 217

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -2

Query: 188 WLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVDYTDSLTEKEWLK 42
           W+ +++D    N+GQ        +++ R  RQR +  +T+   + E  K
Sbjct: 92  WIEQEEDREQTNRGQNKKKTQNRQSVDRTRRQRTDKSWTEQEEDTEQTK 140



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -2

Query: 188 WLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVDYTDSLTEKEWLK 42
           W+ +++D    N+GQ        +++ R  RQR +  +T+   + E  K
Sbjct: 167 WIEQEEDREQTNRGQNKKKTHNRQSVDRTRRQRTDKSWTEQEEDTEQTK 215


>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
          Length = 825

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -2

Query: 248 LERKKTEKHSRLIEESELPDWLVKD-DDEVVCNK------GQGWNYLDEDETLGRGSR 96
           LERKK  KH R+  E   P  +V D   E+   K        G ++ ++D+T+  G R
Sbjct: 558 LERKKFNKHLRIYAEKNKPKTIVADVAKEMPFKKFKSLWSKDGLHFTEKDQTIETGKR 615


>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -2

Query: 242 RKKTEKHSRLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVDYTDSL 63
           R+K+ KHS  +EE+         D E      +     D D   GR S +R+    TDS 
Sbjct: 71  RRKSHKHSLSVEETGRRRMRHDTDSESERESRRPRARHDTDSESGRESGRRRARHDTDSE 130

Query: 62  TEKE 51
           +E+E
Sbjct: 131 SERE 134


>SB_15895| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
          Length = 561

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -2

Query: 248 LERKKTEKHSRLIEESELPDWLVKD-DDEVVCNK------GQGWNYLDEDETLGRGSR 96
           LERKK  KH R+  E   P  +V D   E+   K        G ++ ++D+T+  G R
Sbjct: 294 LERKKFNKHLRIYAEKNKPKTIVADVAKEMPFKKFKSLWSKDGLHFTEKDQTIETGKR 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,554
Number of Sequences: 59808
Number of extensions: 284791
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)