Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30243X
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 54 5e-08
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 54 5e-08
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 51 4e-07
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 50 1e-06
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 50 1e-06
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 50 1e-06
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340... 31 0.67
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 29 2.7
At4g22320.1 68417.m03227 expressed protein 28 3.6
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co... 28 3.6
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 28 3.6
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 4.7
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ... 27 8.3
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 27 8.3
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 54.4 bits (125), Expect = 5e-08
Identities = 28/83 (33%), Positives = 49/83 (59%)
Frame = -3
Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXX 326
R VNS+EE++ A+ KL +A + AG + ++ DR+++L+S+L ++
Sbjct: 1196 RFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDAPV 1255
Query: 325 XVPDDDLINAMIARSEEELEIFK 257
DDD +N +IAR E E++IF+
Sbjct: 1256 L--DDDALNDLIARRESEIDIFE 1276
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 54.4 bits (125), Expect = 5e-08
Identities = 28/83 (33%), Positives = 49/83 (59%)
Frame = -3
Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXX 326
R VNS+EE++ A+ KL +A + AG + ++ DR+++L+S+L ++
Sbjct: 1196 RFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDAPV 1255
Query: 325 XVPDDDLINAMIARSEEELEIFK 257
DDD +N +IAR E E++IF+
Sbjct: 1256 L--DDDALNDLIARRESEIDIFE 1276
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar to
SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 51.2 bits (117), Expect = 4e-07
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = -3
Query: 502 LMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXXX 323
L+ + S+EE IL K+ + KV QAG+ N ST DR++ L+ I+ +
Sbjct: 819 LVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMSKG--TSSLGED 876
Query: 322 VPDDDLINAMIARSEEELEIFKQ 254
VP + IN + AR+EEE +F+Q
Sbjct: 877 VPSEREINRLAARTEEEFWMFEQ 899
Score = 48.0 bits (109), Expect = 4e-06
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = -2
Query: 260 QTIDLERKKTEKH-SRLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKE 84
+ +D ER+K E + +RL+EE E+P+W + + +K N+ G R+RKE
Sbjct: 898 EQMDEERRKKENYKTRLMEEKEVPEWAYTSETQE--DKTNAKNHFGSLT----GKRKRKE 951
Query: 83 VDYTDSLTEKEWLKAID 33
Y+DSL++ +W+KA++
Sbjct: 952 AVYSDSLSDLQWMKAME 968
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar to
SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = -3
Query: 502 LMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXXX 323
L+ V S+EE IL K+ + KV QAG+ N ST DR++ L+ I+ +
Sbjct: 867 LVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRKG--TSSLGTD 924
Query: 322 VPDDDLINAMIARSEEELEIFKQ 254
VP + IN + ARSE+E +F++
Sbjct: 925 VPSEREINRLAARSEDEFWMFER 947
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = -2
Query: 260 QTIDLERKKTEKH-SRLIEESELPDWL-VKDDDEVVCNKGQGWNYLDEDETLGRGSRQRK 87
+ +D ER++ E + +RL++E E+P+W E N G+ + T G R+RK
Sbjct: 946 ERMDEERRRKENYRARLMQEQEVPEWAYTTQTQEEKLNNGK---FHFGSVT---GKRKRK 999
Query: 86 EVDYTDSLTEKEWLKAID 33
E+ Y+D+L+E +WLKA++
Sbjct: 1000 EIVYSDTLSELQWLKAVE 1017
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = -3
Query: 451 KLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXXXVPDDDLINAMIARSEEE 272
K+ +A++V AG +Q++T +R+ L+++LH VP +N MIARSEEE
Sbjct: 1482 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEE 1541
Query: 271 LEIFKQ 254
+E+F Q
Sbjct: 1542 VELFDQ 1547
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = -3
Query: 451 KLTLAEKVTQAGMSNQKSTGSDRQQFLQSILHQAGXXXXXXXXVPDDDLINAMIARSEEE 272
K+ +A++V AG +Q++T +R+ L+++LH VP +N MIARSEEE
Sbjct: 1481 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEE 1540
Query: 271 LEIFKQ 254
+E+F Q
Sbjct: 1541 VELFDQ 1546
>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
Protein of unknown function (DUF740)
Length = 521
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = -3
Query: 508 PRLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKSTGSDRQQFLQS 365
P+L+P++S+ E + A+P K+T EKV + +N T R +L S
Sbjct: 213 PKLIPLSSVTEDVKASP-EKIT-GEKVEEDEKNNPGGTAQTRDYYLDS 258
>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783; contains protein kinase domain
Pfam:PF00069
Length = 1296
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 363 ILCRNCCRSDPVDFWLDIPAWV--TFSAKVNLEPGAAKILSSKELTGMSR 506
IL R+C + P DFWL V + L PG K L ++ L ++R
Sbjct: 372 ILARSCAMTTPGDFWLQCEGIVQDLDDRRQELPPGVLKQLHTRMLFILTR 421
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 230 EKHSRLIEESELPDWLVKDDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVD 78
E+ + I E E D + +DD NK + + +DED+T+ S ++ EV+
Sbjct: 123 EEQKKEITEIEEDDKIEEDDKIDEDNKVEQEDKVDEDKTVEESSEKKAEVE 173
>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 587
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 176 DDDEVVCNKGQGWNYLDEDETLGRGSRQRKEVDYTDSLTEKE 51
++D+V + +G N +E+LG+ R+RK V + EKE
Sbjct: 14 EEDDVPITRSKGRNSASPEESLGK-RRKRKTVKLYEDFEEKE 54
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 104 GSRQRKEVDYTDSLTEKEWLKAI 36
G + R VDY D +TEK+W A+
Sbjct: 125 GDKFRVLVDYVDDVTEKKWTDAL 147
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 266 DIQTIDLERKKTEKHSRLIEESE-LPDWLVKDDDEVVCNKGQGWNYLDED 120
DI D + E S L+E+ + L L K+ D+V G+GW LD D
Sbjct: 640 DIDQADEVAEADEVSSALMEKVDGLIQNLEKEIDDVDIKIGKGWQLLDRD 689
>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
embryonic flower 1 [Arabidopsis thaliana] GI:15430697
Length = 1096
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 505 RLMPVNSLEERILAAPGSKLTLAEKVTQAGMSNQKST--GSDRQQF 374
+L+P N+ RIL+ G+ A K + N +ST G DR F
Sbjct: 299 KLLPENNYVSRILSTMGATSENASKSCDSDQGNSESTDSGFDRTPF 344
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 495 GMSRGHGLQSGGRYDEH 545
G SRGHG +GG Y H
Sbjct: 409 GYSRGHGYNNGGGYANH 425
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,967
Number of Sequences: 28952
Number of extensions: 201610
Number of successful extensions: 678
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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