Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30241
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   1.9  
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    27   1.9  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 342 ESGLVKLQN*TVTFEVFFKLFLIYGQIENCYCF 244
           ES  + LQN  V  E+ FK  ++Y  +EN Y +
Sbjct: 814 ESLNIDLQNNAVVPELHFKEGMVYDSLENAYTY 846


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  EYRKRRQLQI*MQKKRAEIECANNGPSSVDY 123
           E RKRR  Q+ +QKK A    A N PS+  Y
Sbjct: 157 EERKRRIKQLELQKKEAARRAAQNLPSADAY 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,987
Number of Sequences: 5004
Number of extensions: 51653
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)