Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30241
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)           31   0.67 
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)                  31   1.2  
SB_14276| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_104| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.3  
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)                28   8.3  

>SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)
          Length = 319

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 540 LRSTTWQHPTLFLYHNCHIF--KFRIYMIKNQYVYYLLSVM 424
           ++ +T     ++LY NC+ F   +   + KN YVY+LLS +
Sbjct: 120 IQESTPNAKNIYLYRNCYAFVESYIRILAKNYYVYWLLSTL 160


>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
          Length = 458

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 634 HNPTYTM*YYINSYVLCKKCDPNIILFTT*RTTLHYMATP 515
           H PT+T+ ++ N  +L   CD  ++++    TT HY+ +P
Sbjct: 316 HAPTFTVAWHPNKPLLAFACDDKVLVYYC--TTNHYLPSP 353


>SB_14276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 474 RIYMIKNQYVYYLLSVMETLVERKVPSIGLKTKIVG---HAQHQLAFESGLV 328
           R+ M   Q  YY  ++M   + R  PSIG K K  G   +  +++  ESG V
Sbjct: 142 RLSMCNRQLYYYKPTIMHASLPRGRPSIGTKIKKHGAGSYMSYEIILESGTV 193


>SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 623 IYHVILYKQLRVVQKVRSKYNFIYYIADYAPLHGNTQLCFYTITVIFLN 477
           IY V   + LR + K+   YNFI  ++    LHGN     Y++T ++L+
Sbjct: 90  IYLVEGLENLRKLTKLDLSYNFIENVSGLKDLHGNG----YSLTTLYLH 134


>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 524 HVVERSPLCSK*NYIWIALFAQHVTVYIILHGIC 625
           + +E+ P+C K   IW     + V+ Y++ HG C
Sbjct: 188 NTIEKYPVCDK-EGIWQTTLQKIVSTYLVHHGYC 220


>SB_104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -3

Query: 540 LRSTTWQHPTLFLYHNCHIFK---FRIYMIKNQYVYYLLS 430
           ++ +T     +++Y NC+ F     R++ ++N YVY+LLS
Sbjct: 123 IQESTPNAKNIYIYRNCYAFAESCVRMF-VQNYYVYWLLS 161


>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
          Length = 526

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 183 LGRAKDSFRVKKEKLLWLKSVVHTRGSIISTFN 85
           +GR K  F++K   L WL+S +  R   +   N
Sbjct: 494 IGRLKHRFKIKGSALSWLRSYLSDRSQFVKIGN 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,553
Number of Sequences: 59808
Number of extensions: 347758
Number of successful extensions: 3887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3887
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)