Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30241
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z14092-5|CAD45600.1|  816|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z14092-3|CAA78473.3|  754|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   7.3  

>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  NLNAKETRRN*MC**WTL*CGLHFSATRAFPSSHEKS 167
           N   K    +  C  W L C L+F AT  FP  HE++
Sbjct: 220 NWKTKSAYTSEQCDLWALGCTLYFCATGKFPFEHERN 256


>Z14092-5|CAD45600.1|  816|Caenorhabditis elegans Hypothetical
           protein R107.4c protein.
          Length = 816

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  NLNAKETRRN*MC**WTL*CGLHFSATRAFPSSHEKS 167
           N   K    +  C  W L C L+F AT  FP  HE++
Sbjct: 220 NWKTKSAYTSEQCDLWALGCTLYFCATGKFPFEHERN 256


>Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical
           protein R107.4b protein.
          Length = 820

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  NLNAKETRRN*MC**WTL*CGLHFSATRAFPSSHEKS 167
           N   K    +  C  W L C L+F AT  FP  HE++
Sbjct: 220 NWKTKSAYTSEQCDLWALGCTLYFCATGKFPFEHERN 256


>Z14092-3|CAA78473.3|  754|Caenorhabditis elegans Hypothetical
           protein R107.4a protein.
          Length = 754

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  NLNAKETRRN*MC**WTL*CGLHFSATRAFPSSHEKS 167
           N   K    +  C  W L C L+F AT  FP  HE++
Sbjct: 220 NWKTKSAYTSEQCDLWALGCTLYFCATGKFPFEHERN 256


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 468 YMIKNQYVYYLLSVMETLVERKVPSIG 388
           + I  +++YYLLS +  L  RK P IG
Sbjct: 452 WYIGTEFIYYLLSPIFLLTLRKAPKIG 478


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -2

Query: 610 YYINSYVLCKKCDP---NIILFTT*RTTLHYMATPNFV 506
           YY  +Y  C KCD    ++ +FTT   +L  +A P ++
Sbjct: 7   YYSTNYTTCSKCDTFLCSLQVFTTLGCSLSVIAMPLYI 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,672
Number of Sequences: 27780
Number of extensions: 284417
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)