Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30241
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At2g24510.1 68415.m02928 F-box family protein-related contains T...    28   6.8  
At4g39840.1 68417.m05645 expressed protein                             27   9.0  

>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
 Frame = -3

Query: 507 FLYHNCHIFKFR----IYMIKNQYVYY-LLSVMETLVERKVPSIGLKTKIVGHAQHQ--L 349
           FL    H+FK+     I  ++N+ +YY  L + E + ER     G+   +   A H   +
Sbjct: 46  FLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEER-----GMNKTVSDQAIHLDLV 100

Query: 348 AFESGLVKLQN*TVTFEVFFKLFLIYGQIENCYC 247
           A    +   +N  V      K  L YG + NCYC
Sbjct: 101 AKAREITAGENYFVDLPETSKTELTYGSLLNCYC 134


>At2g24510.1 68415.m02928 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           similar to  F-box protein family, AtFBX9 (GI:20197985)
           [Arabidopsis thaliana]
          Length = 281

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 413 LNEKSLQLV*KLKLWVTLSTNWPLKADWSNYKIRQLHLKFFL 288
           L++K L+   ++K+W+T   +  ++  WSN+ +   + KF L
Sbjct: 176 LHQKILEFSNEMKIWLTNKIDETIELSWSNFVLTVDYDKFNL 217


>At4g39840.1 68417.m05645 expressed protein
          Length = 451

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 450 YVYYLLSVMETLVERKVPSIGLKTKIVGHAQHQLAFESGL 331
           YV+YLL ++  LV       GL  K++G AQ  + F  GL
Sbjct: 355 YVFYLLLLLMYLVLVFSTDCGLGLKVLGLAQTFVGFAVGL 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,840
Number of Sequences: 28952
Number of extensions: 242115
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)