BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30238X (434 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 104 5e-24 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.71 SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 2.2 SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 6.7 SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 25 6.7 >SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces pombe|chr 3|||Manual Length = 253 Score = 104 bits (250), Expect = 5e-24 Identities = 47/73 (64%), Positives = 60/73 (82%) Frame = +1 Query: 214 KNRQTREHLLVFFTIKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393 K + E L IKE+QI+D+FL P LND+V+K++PVQKQTRAGQRTRFKAFV IGD+ Sbjct: 48 KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106 Query: 394 NGHIGLGVKCSKE 432 +GH+GLG+KC+KE Sbjct: 107 DGHVGLGIKCAKE 119 Score = 52.4 bits (120), Expect = 3e-08 Identities = 22/36 (61%), Positives = 29/36 (80%) Frame = +2 Query: 155 KEDQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262 ++++KEWVPVTKLGRLV+ KI +E IYL+SL K Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 27.9 bits (59), Expect = 0.71 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -1 Query: 152 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27 ++HDHG H + H DR + R R++R ++ PP Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760 >SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharomyces pombe|chr 2|||Manual Length = 436 Score = 26.2 bits (55), Expect = 2.2 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 263 NSRSLISSSARP*MIKF*RSCLYRNKHVPDSAHVSRH 373 +SR+ I S+ +K+ S R KH+P+ ++RH Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384 >SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|Schizosaccharomyces pombe|chr 2|||Manual Length = 1173 Score = 24.6 bits (51), Expect = 6.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -3 Query: 309 LIIQGRAEEEINDLEFFDCKENK*MLSSL 223 LI++ EEI+D +F D N +++SL Sbjct: 856 LILKSLGVEEISDFDFMDRPPNDTLMASL 884 >SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 24.6 bits (51), Expect = 6.7 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +1 Query: 214 KNRQTREHLLVFFTIKEFQIIDFFLGPSLND 306 +NR+T + LV T+ +FF P L+D Sbjct: 272 RNRKTNQTRLVRTTVPNDSFFNFFSPPQLDD 302 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,574,973 Number of Sequences: 5004 Number of extensions: 27031 Number of successful extensions: 71 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 70 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 156095170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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