Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30238X
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   104   5e-24
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.71 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   2.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   6.7  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   6.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  104 bits (250), Expect = 5e-24
 Identities = 47/73 (64%), Positives = 60/73 (82%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKE+QI+D+FL P LND+V+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 394 NGHIGLGVKCSKE 432
           +GH+GLG+KC+KE
Sbjct: 107 DGHVGLGIKCAKE 119



 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
           ++++KEWVPVTKLGRLV+  KI  +E IYL+SL  K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 152 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 263 NSRSLISSSARP*MIKF*RSCLYRNKHVPDSAHVSRH 373
           +SR+ I S+     +K+  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 309 LIIQGRAEEEINDLEFFDCKENK*MLSSL 223
           LI++    EEI+D +F D   N  +++SL
Sbjct: 856 LILKSLGVEEISDFDFMDRPPNDTLMASL 884


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFQIIDFFLGPSLND 306
           +NR+T +  LV  T+      +FF  P L+D
Sbjct: 272 RNRKTNQTRLVRTTVPNDSFFNFFSPPQLDD 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,973
Number of Sequences: 5004
Number of extensions: 27031
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)