Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30238X
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       95   2e-20
07_01_0756 + 5819367-5820038,5820847-5821005                           91   4e-19
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    41   4e-04
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     32   0.18 
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    28   2.9  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    27   6.6  
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089     27   8.7  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 42/59 (71%), Positives = 51/59 (86%)
 Frame = +1

Query: 256 IKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
           +KE QI++  + P L D+V+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KE
Sbjct: 72  VKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKE 129



 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
           ++++++WVPVTKLGRLV+  +  K+E IYL SL  K
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 43/73 (58%), Positives = 54/73 (73%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K  +  E  L    +KE QI++  + P L D+V+KI PVQKQTRAGQRTRFKAFV +GD 
Sbjct: 61  KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119

Query: 394 NGHIGLGVKCSKE 432
           +GH+GLGVKC+KE
Sbjct: 120 DGHVGLGVKCAKE 132



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 21/36 (58%), Positives = 29/36 (80%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
           ++++++WVPVTKLGRLV+  KI K+E IYL SL  K
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 30/44 (68%)
 Frame = +1

Query: 301 NDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
           +++V+++  V K  + G++  F+A V +GD  GH+G+GV  +KE
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKE 214


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 373 FVAIGDNNGHIGLGVKCSK 429
           FV +GD + HI LGVKC+K
Sbjct: 2   FVVVGDGDSHIELGVKCAK 20


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 432 FLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 319
           F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 656 FIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 140 HGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL 9
           +GR H     D RG+ L+ +++  R +  V++ E   P L  GL
Sbjct: 48  YGRIHFPGDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGL 91


>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
          Length = 681

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 265 FQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTR 363
           F+++ FFL P    + L   PV   + AG+R R
Sbjct: 31  FRVLPFFLCPPPQSRSLSFSPVSAVSTAGKRGR 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,839,773
Number of Sequences: 37544
Number of extensions: 194638
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)