Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30238X
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 7e-28
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 1.7
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 1.7
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 1.7
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 1.7
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 2.9
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) 27 5.0
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 27 8.8
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 120 bits (288), Expect = 7e-28
Identities = 56/71 (78%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Frame = +1
Query: 223 QTREHLLVF-FTIKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 399
+T EH+ +F IKEF+IIDFFLG +L D+VLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 400 HIGLGVKCSKE 432
H+GLGVKCSKE
Sbjct: 84 HVGLGVKCSKE 94
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +2
Query: 173 WVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
WVPVTKLGRLV+ KI LE IYLFSL K
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 301 NDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 414
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 301 NDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 414
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 301 NDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 414
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 301 NDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 414
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 301 NDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 414
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 301 NDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 414
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 351 TAHTFQGICCHWRQQRSYW 407
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
Length = 174
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 168 KSGFLSPNSAVLFAXEKSTNSRAFTCFLYNQ 260
KSG L ++F E +S+AF C LYN+
Sbjct: 56 KSGRLGGMPNIVFNSEYQWSSKAFLCTLYNK 86
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 429 LAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 316
LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 114 LAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,509,882
Number of Sequences: 59808
Number of extensions: 223882
Number of successful extensions: 582
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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