Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30238X
(434 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 109 8e-25
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 109 8e-25
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 107 2e-24
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 107 2e-24
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 107 2e-24
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 107 2e-24
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 39 0.002
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 2.4
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 4.1
At5g47430.1 68418.m05844 expressed protein 27 7.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 7.2
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 7.2
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 7.2
At2g37930.1 68415.m04656 expressed protein 26 9.5
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 109 bits (262), Expect = 8e-25
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = +1
Query: 256 IKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
+KE+QIID +GPSL D+V+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKE
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKE 131
Score = 48.0 bits (109), Expect = 3e-06
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
++++WVPVTKLGRLV+ KI K+E IYL SL K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 109 bits (262), Expect = 8e-25
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = +1
Query: 220 RQTREHLLVFFTIKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 399
+Q + L +KE+QIID +GP+L D+V+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 400 HIGLGVKCSKE 432
H+GLGVKCSKE
Sbjct: 130 HVGLGVKCSKE 140
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
++++WVPVTKLGRLV I ++E IYL SL K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 107 bits (258), Expect = 2e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1
Query: 256 IKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
+KE+QIID +GP+L D+V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 107 bits (258), Expect = 2e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1
Query: 256 IKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
+KE+QIID +GP+L D+V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 107 bits (258), Expect = 2e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1
Query: 256 IKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
+KE+QIID +GP+L D+V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 107 bits (258), Expect = 2e-24
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1
Query: 256 IKEFQIIDFFLGPSLNDQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
+KE+QIID +GP+L D+V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVRXXKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +1
Query: 304 DQVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 432
++V+++ V K + G++ +F+A V +GD G++G+G +KE
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKE 191
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 370 AFVAIGDNNGHIGLGVKCSKE 432
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 3 LSEPIVQQWRTLLQP 47
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 143 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 134 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 134 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 134 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 190 TRPSCSXXKNRQTREHLLVFFTI-KEFQIIDFFLGPSLNDQVLKIM 324
TRP K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,525,020
Number of Sequences: 28952
Number of extensions: 153071
Number of successful extensions: 379
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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