Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30237
         (815 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3USQ6 Cluster: Adult male corpora quadrigemina cDNA, R...    33   8.6  
UniRef50_P51610 Cluster: Host cell factor (HCF) (HCF-1) (C1 fact...    33   8.6  

>UniRef50_Q3USQ6 Cluster: Adult male corpora quadrigemina cDNA,
           RIKEN full-length enriched library, clone:B230340A05
           product:Transcription factor C1 (HCF) homolog; n=9;
           Euteleostomi|Rep: Adult male corpora quadrigemina cDNA,
           RIKEN full-length enriched library, clone:B230340A05
           product:Transcription factor C1 (HCF) homolog - Mus
           musculus (Mouse)
          Length = 209

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 646 QMLLFGTFI*YASLS*KCCEIQASDLTGSRTSCESARVGPPPC 774
           ++L+FG  + Y   S    E+QAS     R   ++ + GPPPC
Sbjct: 93  RLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPC 135


>UniRef50_P51610 Cluster: Host cell factor (HCF) (HCF-1) (C1 factor)
           (VP16 accessory protein) (VCAF) (CFF) [Contains: HCF
           N-terminal chain 1; HCF N-terminal chain 2; HCF
           N-terminal chain 3; HCF N-terminal chain 4; HCF
           N-terminal chain 5; HCF N-terminal chain 6; HCF
           C-terminal chain 1; HCF C- terminal chain 2; HCF
           C-terminal chain 3; HCF C-terminal chain 4; HCF
           C-terminal chain 5; HCF C-terminal chain 6]; n=32;
           Eumetazoa|Rep: Host cell factor (HCF) (HCF-1) (C1
           factor) (VP16 accessory protein) (VCAF) (CFF) [Contains:
           HCF N-terminal chain 1; HCF N-terminal chain 2; HCF
           N-terminal chain 3; HCF N-terminal chain 4; HCF
           N-terminal chain 5; HCF N-terminal chain 6; HCF
           C-terminal chain 1; HCF C- terminal chain 2; HCF
           C-terminal chain 3; HCF C-terminal chain 4; HCF
           C-terminal chain 5; HCF C-terminal chain 6] - Homo
           sapiens (Human)
          Length = 2035

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 646 QMLLFGTFI*YASLS*KCCEIQASDLTGSRTSCESARVGPPPC 774
           ++L+FG  + Y   S    E+QAS     R   ++ + GPPPC
Sbjct: 93  RLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPC 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,839,637
Number of Sequences: 1657284
Number of extensions: 13665884
Number of successful extensions: 26234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26229
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)