Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30237
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    29   0.60 
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    29   0.79 
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    28   1.8  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.6  

>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 357 FF*QVYSQRYEVSPEFRFVNY 295
           FF Q+   RYEV+PE +F NY
Sbjct: 218 FFWQLIKGRYEVAPESKFFNY 238


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 548 KQFDRKFDRLGVYDKGNLHRSSSE*YCSVDRRSKCCCSELLFNMQAYLENVVRFRHLTLL 727
           K+FD    R G+++ GNL  +  E     D+ +    S +  + + Y +N +  +H++ L
Sbjct: 24  KKFDAYMKRHGLFEPGNLSNNDKERNLE-DQFNSMKLSPVASSKENYPDNHMHSKHISKL 82

Query: 728 AVGPLVSPRG 757
            +   + PRG
Sbjct: 83  PIASPI-PRG 91


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 54  SHDFSCVQAAPSNYKTLSRQKLFIQGCHKPFYHYEFTPTVQNT*GLDYFEINLSY 218
           SH F C+  + S Y  +S  + + +   +  +HY    T+     +  F + L+Y
Sbjct: 532 SHRFPCIFTSFSCYNCISGTRKYSRQYSRDKFHYNQRTTIYYLVAISIFALGLTY 586


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 639 RSTEQYHSLDDR*RFPLSYTPKRS 568
           R+++++   D + R+PLS TPK+S
Sbjct: 608 RTSQRFFKSDGKVRYPLSNTPKKS 631


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 54  SHDFSCVQAAPSNYKTLSRQKLFIQGCHKPFYHYEFTPTVQNT*GLDYFEINLSY 218
           SH F C+  + S Y  +S  +   +   +  +HY    T+     +  F + L+Y
Sbjct: 532 SHRFPCIFTSFSCYNCISGTRNISRQYSRDKFHYNQRTTIYYLVAISIFALGLTY 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,766
Number of Sequences: 5004
Number of extensions: 63117
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)