Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30236X
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    29   0.27 
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    29   0.36 
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    26   3.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.9  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   5.9  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.8  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.8  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 415 ESDPVGFDSSLFSRYNVGEVDNHIRNL 335
           +SDP+G DSSL S  +VG +DN+I  L
Sbjct: 253 DSDPLGVDSSL-SFESVGGLDNYINQL 278


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 361 PRHYTERRDYYQNQQDLIPQIFRL 432
           PRH+ ++RDY   Q+ +  Q+F L
Sbjct: 228 PRHWNQKRDYLSGQRGIERQLFEL 251


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 191 LLLIAVVNARHYGDRRDSGSSEMMTNKTTSRKKEI 295
           LLL+  +N    GDR++S +S+     ++  KK++
Sbjct: 48  LLLVPSLNLEKQGDRKESVASKKRKKLSSKEKKKL 82


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 391 YQNQQDLIPQIFRLLYELAVE-VRRQPPP 474
           +Q  +DLIP++  LL  L ++ +  +PPP
Sbjct: 253 FQTYKDLIPKMLPLLAPLVLQFISLRPPP 281


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 226 WRQKRLWKF 252
           WRQKRLW F
Sbjct: 90  WRQKRLWSF 98


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 391 SSLFSRYNVGEVDNHIRNLVAISSYGVCLGSGNLFLS*SRFVRH 260
           +S  S   +GE +NH R + +     +  G  N+ +    FVRH
Sbjct: 126 NSSISDIRIGEKNNHYRIVFSSVDNSLVKGPSNVHVYDHLFVRH 169


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 471 WWLPPYLNSELVKQSKY 421
           WW P Y+N EL  ++ Y
Sbjct: 576 WWTPVYVNQELRCKNAY 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,320
Number of Sequences: 5004
Number of extensions: 31536
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)