Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30236X
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723...    28   4.4  
04_03_0869 + 20421368-20421548,20421781-20422664,20422747-204229...    27   5.8  
04_04_0404 - 24952444-24953094                                         27   7.7  

>01_05_0660 -
           24071523-24071780,24071873-24072127,24072209-24072380,
           24072458-24072685,24072785-24072918,24073005-24073088,
           24073231-24073521,24073599-24073931,24074016-24074266,
           24074354-24074620,24074707-24074867,24074978-24075294,
           24075386-24075667,24075753-24076054,24076147-24076237,
           24076326-24076379,24076497-24076573,24076700-24076859,
           24077129-24077213,24077421-24077630,24077736-24078097
          Length = 1457

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 170 FTLVLGFLLLIAVVNARHYGDRRDSGSSEMMTNKTTSRKKEI 295
           FT++   L  +A+   R YG+ R S S E +  K  +   EI
Sbjct: 773 FTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEI 814


>04_03_0869 +
           20421368-20421548,20421781-20422664,20422747-20422905,
           20423008-20423252,20423360-20423453,20423580-20423768
          Length = 583

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 331 QLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 420
           +L  GY +QPP+H+     YY+    L  Q
Sbjct: 45  KLRTGYHFQPPKHWINGPMYYKGLYHLFYQ 74


>04_04_0404 - 24952444-24953094
          Length = 216

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 206 VVNARHYGDRRDSGSSEMMTNKTTSRKKEI 295
           VV A  YG+RR S ++ ++   T  ++KE+
Sbjct: 126 VVRAVEYGERRGSPAAPLLLTVTEGKEKEV 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,583
Number of Sequences: 37544
Number of extensions: 209836
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)