Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30236X
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               30   1.1  
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)               29   2.6  
SB_52683| Best HMM Match : BCNT (HMM E-Value=3)                        27   7.9  
SB_11114| Best HMM Match : UPF0203 (HMM E-Value=9.6)                   27   7.9  

>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 340 YGYDYQPPRHYTE-RRDYYQNQQDLIPQIF 426
           Y Y Y+ PRHYTE R + + N  D+   +F
Sbjct: 750 YSYLYELPRHYTECRTELWLNNTDMRGSVF 779


>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
          Length = 799

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 295 YPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQ 396
           Y TLN+  R+     Y Y+YQ     +   DYYQ
Sbjct: 413 YSTLNQEHRQNRNDYYSYNYQRASSESRSFDYYQ 446


>SB_52683| Best HMM Match : BCNT (HMM E-Value=3)
          Length = 225

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 247 KF*DDDEQNDFKKERDYPTLNRHRRRRWQLNYGYDYQPPRHYTER-RDYYQNQQD 408
           ++ D D   D+ ++RDY   +R+   R   +  YD    R+Y +R RDY    +D
Sbjct: 131 RYRDQDRDRDYDRDRDYDDRDRYYDDR---DRYYD-DRDRYYDDRDRDYDDRDRD 181


>SB_11114| Best HMM Match : UPF0203 (HMM E-Value=9.6)
          Length = 197

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 355 DNHIRNLVAISSYGVCLGSGNLFLS*SRFVRHHLRTS 245
           D+H +N  + SS+ +C+G+    +S  +++  H+ TS
Sbjct: 27  DHHFKNATSPSSHTICVGTTLEGVSVQKYLGVHISTS 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,542
Number of Sequences: 59808
Number of extensions: 251079
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)