Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30236X
         (474 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated...    31   1.5  
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr...    31   1.5  
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ...    31   1.5  
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc...    31   1.5  

>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 289 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 429
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 648 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 693


>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
           protein.
          Length = 3261

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 289 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 429
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 245 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 290


>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 289 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 429
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 648 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 693


>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
           transcription cofactor protein.
          Length = 3664

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 289 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 429
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 648 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 693


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,537,491
Number of Sequences: 237096
Number of extensions: 1052623
Number of successful extensions: 6205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6205
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)