Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30236X
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    27   9.1  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    27   9.1  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 307 NRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQ 405
           NR+   RW  N   DY  PR+Y+ R  + +NQ+
Sbjct: 600 NRNYDERWSRN---DYSNPRNYSNRSFHQRNQR 629


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 214 INNRYKQQEPKN*GEFIHLGTRAISDKNN 128
           +  R+K Q+ K     IHLGTR  S  N+
Sbjct: 286 MKRRFKMQKKKLPPRMIHLGTRPASQSNS 314


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical
           protein ZK370.4b protein.
          Length = 1353

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 319 RRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFRLLYEL 444
           R+  + N     +PP+ + E  D  +  Q+L P+IF +L+ L
Sbjct: 204 RQNQENNKDTRVRPPQEFFEPTDLPEIPQNLQPEIFYILHNL 245


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical
           protein ZK370.4a protein.
          Length = 1342

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 319 RRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFRLLYEL 444
           R+  + N     +PP+ + E  D  +  Q+L P+IF +L+ L
Sbjct: 204 RQNQENNKDTRVRPPQEFFEPTDLPEIPQNLQPEIFYILHNL 245


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 214 INNRYKQQEPKN*GEFIHLGTRAISDKNN 128
           +  R+K Q+ K     IHLGTR  S  N+
Sbjct: 286 MKRRFKMQKKKLPPRMIHLGTRPASQSNS 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,371,215
Number of Sequences: 27780
Number of extensions: 183231
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)