Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30236X
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09700.1 68417.m01594 hypothetical protein similar to zinc fi...    31   0.53 
At4g31040.1 68417.m04408 proton extrusion protein-related contai...    30   0.70 
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038...    30   0.70 
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    29   1.2  
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    29   1.2  
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam...    27   4.9  
At3g28770.1 68416.m03591 expressed protein                             27   4.9  
At5g42660.1 68418.m05197 expressed protein contains Pfam profile...    27   8.6  

>At4g09700.1 68417.m01594 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 371

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +1

Query: 259 DDEQNDFKKERDYPTLNRHRRRRWQLNYG------YDYQPPRHYTERRDYYQNQQDLIP 417
           +  ++D +++ DYP+   HR R  + ++        DY  P  Y  RRD  ++  DL P
Sbjct: 275 NSRRSDHREKSDYPSAYSHRHREPRRDFSPQDCSRRDYSRPASYNFRRDSVRSGFDLHP 333


>At4g31040.1 68417.m04408 proton extrusion protein-related contains
           weak similarity to Proton extrusion protein pcxA
           (Swiss-Prot:P75028) [Synechocystis sp.]
          Length = 438

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 199 YSGC*CTALW--RQKRLWKF*DDDEQNDFKKERDYPTLNRHRRRRWQLNYGYD 351
           Y  C   +LW  R+K+LW+F    E+N+      +   N  RRR W   + +D
Sbjct: 33  YKPCDSISLWGKRRKKLWRFVPSAEKNN-----SHTGNNNKRRRSWWQRFFFD 80


>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
           Nuf2 family domain; similar to Myosin-like protein NUF2
           (Nuclear filament-containing protein 2) (Nuclear
           division protein nuf2) (Swiss-Prot:Q10173)
           [Schizosaccharomyces pombe]
          Length = 974

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 265 RHHLRTSRVSSVAIMPCINNRYKQ 194
           RH++RT+ VS  A  PC  NR++Q
Sbjct: 584 RHNIRTANVSISARHPCFGNRWQQ 607


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 328 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 420
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 328 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 420
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus CA
           donor splice site at exon 1 and TA acceptor splice site
           at exon 2
          Length = 445

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 167 KFTLVLGFLLLIAVVNARHYGDRRDSGSSEMMTNKTTS 280
           K +L  G  L++     R +GD+++  S+   T KTTS
Sbjct: 407 KVSLRQGLPLMVKDFRQRVFGDQKEGSSAAATTTKTTS 444


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 236  RDSGSSE-MMTNKTTSRKKEITRP*TDTVGGDGN*ITDMIINLPDIIP 376
            +D GS+E  M N+TT    +I    TDT       +T  I NL +  P
Sbjct: 1852 QDVGSNENSMNNQTTGTGDDIISTTTDTESNTSKEVTSFISNLEEKSP 1899


>At5g42660.1 68418.m05197 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 463

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 259 DDEQNDFKKERDYPTLNRHRRRRWQLNYGYDYQPPRH 369
           DDE ND  + R      R RR+R ++++   Y+ PRH
Sbjct: 13  DDESNDLNRIRA-----RTRRKRKKVSHRTSYELPRH 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,822,100
Number of Sequences: 28952
Number of extensions: 170067
Number of successful extensions: 394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)