Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30235
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 111 1e-25
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 92 9e-20
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 32 0.073
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 27 2.1
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 27 2.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 4.8
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 4.8
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 6.3
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 8.4
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 8.4
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 25 8.4
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 111 bits (267), Expect = 1e-25
Identities = 49/73 (67%), Positives = 61/73 (83%)
Frame = +3
Query: 486 PQSVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHF 665
P + LGLGHSYSRA+VKFNV+R DNMII +IA+LDQLDKD+NTF+MR++EWYS+HF
Sbjct: 140 PGDFERAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDINTFAMRMKEWYSWHF 199
Query: 666 PELVSIVPENHLY 704
PEL IV +N+ Y
Sbjct: 200 PELSKIVGDNYKY 212
Score = 63.3 bits (147), Expect = 3e-11
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 NINAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAI-SEALEIQCTHTGAVP 432
N N +SEG+L + L FLE LPK K+ K +LGV D L +I SE I+C +
Sbjct: 62 NANDISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQ 121
Query: 433 EILRGIRYHFHSLIKGLTLKACSVARLAL 519
++LRGIR+H L+K L+ A+L L
Sbjct: 122 DLLRGIRFHGDKLLKQLSPGDFERAQLGL 150
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 91.9 bits (218), Expect = 9e-20
Identities = 38/80 (47%), Positives = 57/80 (71%)
Frame = +3
Query: 486 PQSVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHF 665
P + +LGL HS SR ++KF+ +VD MI+ +IALLD LDK++NT++MR+REWY +HF
Sbjct: 133 PSDLNAMSLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHF 192
Query: 666 PELVSIVPENHLYTKCAEFM 725
PE+ I+ +N Y + + M
Sbjct: 193 PEMGKIIQDNLAYARVIKAM 212
Score = 49.2 bits (112), Expect = 6e-07
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 NINAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISE--ALEIQCTHTGAV 429
N++A+ EG + L+ LEG L K TL V DPKLG AI++ LE + +V
Sbjct: 58 NVSALVEGKVSSKLSSLLEG-LSDSKSS---TLVVADPKLGNAINKLPGLEFEIISDSSV 113
Query: 430 PEILRGIRYHFHSLIKGLTLKACSVARLALA 522
++ RGIR H SLI GL + L L+
Sbjct: 114 QDLYRGIREHLSSLISGLAPSDLNAMSLGLS 144
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 32.3 bits (70), Expect = 0.073
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 570 NMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 710
++I+ S ++ ++D ++ ++EWY FPEL S+V Y K
Sbjct: 118 HLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 98 HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIV 247
HS G + FR+ + EEL + P+V + Q + A L+ F K IV
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 483 YPQSVQ--CGTLGLGHSYSRARVKFNVHRVD 569
YPQ++ CGT+GL H+ S ++ V+ D
Sbjct: 75 YPQTIPNACGTIGLLHAVSNGELRRKVNEND 105
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 4.8
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +3
Query: 360 TGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSLPLAH---QRSYPQSVQCGTLGLGHSY 530
T +Q SS Q L R+S D ERH ++ + + VQC + ++
Sbjct: 838 TETQRLSSLQTELSRLRDEKRNSEVDIERHRQTVESCTNILREKEAKKVQCAQVVADYT- 896
Query: 531 SRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREW 650
A+ RV + P+ +LD ++ M+I EW
Sbjct: 897 --AKANTRCERVPVQLSPA-----ELDNEIERLQMQIAEW 929
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 335 FFLFGRPPSRNRFKSSGRIPSDTALIFPKQRSPT-CVVEKLLKSQQH*NVANLSRTLRPE 159
FFLF FK I + I T CV+ L+ ++H ++ L + PE
Sbjct: 9 FFLFDFTSIMAGFKVPSWITYKSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPE 68
Query: 158 AGKPLTL 138
AGK + L
Sbjct: 69 AGKSIQL 75
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -1
Query: 308 RNRFKSSGRIPSDTALIFPKQRSPTCVVEKLLKSQQH*NVANLSRTLRPEAGKPLTLQIQ 129
RNR +G P SPT + KS ++A+ + RP KPL +++
Sbjct: 259 RNREGGNGSYFDGPLTASPTPSSPTGTPNSMSKSPSLSSLASTGASYRPGPSKPLVSRVR 318
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 179 TDLQRFNAVVTLIA-FQPHKSAIVALEISTRYLKVFFL 289
T L F ++A F P S+ V+ +S R +++FFL
Sbjct: 213 THLSAFIVFFAVLAYFYPSSSSWVSSNVSNRIVRIFFL 250
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 208 DFNSFSTTQVGDRCFGNINAVSEGILPEDLNLFL 309
D N+F T+ G + F ++ P+D+ LF+
Sbjct: 209 DANNFGGTEYGGKAFSDLIIHLNSQFPDDIGLFV 242
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 636 RIREWYSYHFPELVSIVPENHLYTKCAEFM 725
RI+ WY+ +PE S ++ C ++M
Sbjct: 112 RIKPWYTSPYPEEYSCAKNLYICESCLKYM 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,975
Number of Sequences: 5004
Number of extensions: 62907
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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