Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30235
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 119 3e-27
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 103 1e-22
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 93 2e-19
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 93 2e-19
01_05_0604 - 23583244-23584989 30 2.2
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353... 29 2.9
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011... 29 3.8
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 29 5.0
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 28 6.6
07_01_0103 - 779554-780434,780542-780791 28 8.7
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 119 bits (286), Expect = 3e-27
Identities = 50/73 (68%), Positives = 65/73 (89%)
Frame = +3
Query: 510 LGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVP 689
LGLGHSYSRA+VKFNV+RVDNM+I +I LLD LDKD+N+FSMR+REW+ +HFPELV IV
Sbjct: 149 LGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWFGWHFPELVKIVN 208
Query: 690 ENHLYTKCAEFMK 728
+N++Y K A+++K
Sbjct: 209 DNYIYAKLADYIK 221
Score = 74.1 bits (174), Expect = 1e-13
Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Frame = +1
Query: 262 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 435
NA+SEGI+ ++L FLE LPK K K++K +LGV++PK+G+ ISE I C V E
Sbjct: 64 NAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFVQE 123
Query: 436 ILRGIRYHFHSLIKGLTLKACSVARLAL 519
+LRG+R HF I L A+L L
Sbjct: 124 LLRGVRLHFDRFISELKKSDLEKAQLGL 151
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 103 bits (247), Expect = 1e-22
Identities = 53/100 (53%), Positives = 69/100 (69%), Gaps = 20/100 (20%)
Frame = +3
Query: 486 PQSVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRI-------- 641
P ++ LGLGHSYSRA+VKFNV+RVDNM+I +I LLD LDKD+N+FSMR+
Sbjct: 179 PTDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVSLFFPLFY 238
Query: 642 ------------REWYSYHFPELVSIVPENHLYTKCAEFM 725
REWYS+HFPELV IV +N++Y+K A+F+
Sbjct: 239 AMINSGGESLPPREWYSWHFPELVKIVNDNYVYSKIAKFV 278
Score = 71.3 bits (167), Expect = 7e-13
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +1
Query: 262 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 435
NA+SEGI+ ++L FLE LPK K K++K ++GV++PK+G+ ISEA I C V E
Sbjct: 64 NAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQE 123
Query: 436 ILRGIRYHFHSLIKGL 483
+LRG+R HF I L
Sbjct: 124 LLRGVRLHFDHFIDQL 139
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +2
Query: 83 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVAL 253
Y+LFE ++G+ALF +E+ + SV +LQRF+ V L F P SA+ AL
Sbjct: 4 YLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDAL 60
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 93.5 bits (222), Expect = 2e-19
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = +3
Query: 507 TLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIV 686
+LGL HS SR ++KF+ +VD MII +I LLD LDK++NT++MR+REWY +HFPEL IV
Sbjct: 137 SLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIV 196
Query: 687 PENHLYTKCAEFM 725
+N Y K + M
Sbjct: 197 ADNIQYAKVVKMM 209
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +1
Query: 349 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGL 483
TL V D KLG AI E L+I C H AV E++RG+R LI GL
Sbjct: 84 TLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGL 128
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 86 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALEIST 265
VLFE AGFALF+V + +L + + + T VV L AF ++ AL +T
Sbjct: 3 VLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAAT 61
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 93.5 bits (222), Expect = 2e-19
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = +3
Query: 507 TLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIV 686
+LGL HS SR ++KF+ +VD MII +I LLD LDK++NT++MR+REWY +HFPEL IV
Sbjct: 137 SLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIV 196
Query: 687 PENHLYTKCAEFM 725
+N Y K + M
Sbjct: 197 ADNIQYAKVVKMM 209
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +1
Query: 349 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGL 483
TL V D KLG AI E L+I C H AV E++RG+R LI GL
Sbjct: 84 TLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGL 128
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 86 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALEIST 265
VLFE AGFALF+V + +L + + + T VV L AF ++ AL +T
Sbjct: 3 VLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAAT 61
>01_05_0604 - 23583244-23584989
Length = 581
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 348 HTRCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSL--PLAHQRSY--PQSVQCGTLG 515
+T +G Q ++ ++H R+S GD + H LSL P A+ SY P Q G+L
Sbjct: 37 NTETSGVQETTAVASKCVPTIHFVRASSGDTDHHRLSLFSPPAYCTSYYPPLPPQPGSLA 96
Query: 516 LGHSYSRARVKFN 554
+R + N
Sbjct: 97 TNQIVARLMAQMN 109
>02_02_0592 -
11934238-11934249,11934755-11934835,11935166-11935324,
11936362-11936442,11936523-11936591,11937147-11937260,
11937805-11937858,11938788-11938915,11940527-11940782
Length = 317
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 425 QSRRF*EAYVITSTRSSKVLPSKRAVWHAWPWP---LILTSS--CQVQCSPSGQHDHTIN 589
Q R+ +A+V+T +SKV R A+ WP L+L S C+ C GQH ++
Sbjct: 195 QIRQLEQAFVLTKMMTSKVHQRSRLSETAYKWPGKDLVLKVSRFCKAIC---GQHIRDVD 251
Query: 590 SP 595
P
Sbjct: 252 KP 253
>04_03_0055 +
10299539-10299703,10300042-10300746,10301025-10301116,
10302896-10303313
Length = 459
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 446 PLKISGTAPVCVH*ISKASLMAAPSLGSSTPSVHFDRFFLFGRPPSRNRFKSSGR 282
PL + T+P+ + +++P S PS H R F+F + P+ N + GR
Sbjct: 324 PLVLHATSPLRLLCTLHGPRLSSPK-PSHQPSTHLPRCFIFPQNPTSNELELMGR 377
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 317 PPSRNRFKSSGRIPSDTALIFPKQRSPT 234
PP+R F+S+G P+ TA P + PT
Sbjct: 68 PPTRLFFQSTGACPTQTASSSPSRHEPT 95
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 86 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAF 223
+LFE +GFA+FRV++ L + + S TD + VV I F
Sbjct: 172 MLFETPSGFAMFRVSDV--LFRYPEDIWSSFTDPHTAHQVVRTIGF 215
>07_01_0103 - 779554-780434,780542-780791
Length = 376
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 337 RSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTL 489
+S GV + AA+ EA + G + I RG+R HFH I + +
Sbjct: 285 KSSTRRGVAARLVQAALGEAARKREVRRGDLRRIERGVRRHFHDDITAVVV 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,486,303
Number of Sequences: 37544
Number of extensions: 415142
Number of successful extensions: 1080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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