Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30235
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                134   5e-32
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   3e-14
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)                 30   2.2  
SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)                       29   2.9  
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score =  134 bits (325), Expect = 5e-32
 Identities = 59/73 (80%), Positives = 68/73 (93%)
 Frame = +3

Query: 510 LGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVP 689
           LGLGHSYSRA+VKFN+HRVDNMII SIALLDQLDKD+NTFSMRIREWYSYHFPELV IV 
Sbjct: 80  LGLGHSYSRAKVKFNIHRVDNMIIQSIALLDQLDKDINTFSMRIREWYSYHFPELVKIVN 139

Query: 690 ENHLYTKCAEFMK 728
           +N++Y K A+++K
Sbjct: 140 DNYMYAKVAKYIK 152



 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 41/80 (51%), Positives = 52/80 (65%)
 Frame = +1

Query: 280 ILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYH 459
           I+ +DL  F+E  +P  KK+SK  LGV D K+GAAI E+L I C   G + E+LRGIR H
Sbjct: 3   IIHDDLKAFVEANVPTGKKKSKVLLGVADSKIGAAIQESLNICCDSGGVILEVLRGIRMH 62

Query: 460 FHSLIKGLTLKACSVARLAL 519
           F  +IKGLT    S A+L L
Sbjct: 63  FDKMIKGLTGAMASKAQLGL 82


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 33/65 (50%), Positives = 46/65 (70%)
 Frame = +3

Query: 531 SRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 710
           SR ++KF+  +VD MI+ +I+LLD LDK++N + MR REWY +HFPEL  IV +N  Y K
Sbjct: 58  SRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYAK 117

Query: 711 CAEFM 725
             + M
Sbjct: 118 TVKKM 122


>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
          Length = 231

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 470 SSKVLPSKRAVWHAWPWPLILTSSCQVQCSPS 565
           SS+V+    A  HAWPW + L ++ Q  C  S
Sbjct: 35  SSRVVNGANAPQHAWPWQISLRTNGQHICGGS 66


>SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)
          Length = 231

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 176 VTDLQRFNAVVTLIAFQPHKSAIVALEISTRYLKVF 283
           VT L R+N+ VT +AFQP K+  +A+  + R + V+
Sbjct: 2   VTTLPRYNSAVTAMAFQP-KTNHLAMVCANRQIYVY 36


>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 458 TSTRSSKVLPSKRAVWHAWPWPLILTSSCQVQCSPS 565
           T    S+V+  K A+  AWPW + L S     C  S
Sbjct: 470 TPITQSRVIGGKDAIPGAWPWQIALKSRGNFICGGS 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,831,529
Number of Sequences: 59808
Number of extensions: 489999
Number of successful extensions: 1222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)