Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30235
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 114 7e-26
AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical ... 82 5e-16
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 29 2.6
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 3.4
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 29 4.5
U28941-7|AAC71104.1| 330|Caenorhabditis elegans Hypothetical pr... 28 5.9
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 114 bits (274), Expect = 7e-26
Identities = 49/75 (65%), Positives = 61/75 (81%)
Frame = +3
Query: 492 SVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPE 671
S+ L LGHSYSR++VKF+VHRVDNM+I SIALLDQLDKD+N F MRIREWYSYH+PE
Sbjct: 143 SLSKAQLSLGHSYSRSKVKFDVHRVDNMVIQSIALLDQLDKDINLFGMRIREWYSYHYPE 202
Query: 672 LVSIVPENHLYTKCA 716
L + P+ + Y++ A
Sbjct: 203 LFRLAPDQYKYSRLA 217
Score = 68.1 bits (159), Expect = 6e-12
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +1
Query: 217 SFSTTQVGDRCFGNINAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEA 396
SF + + N N++SEG+ DL FL+ LPK+KK LG+ D KL +++EA
Sbjct: 52 SFDPFKNTEAALENCNSISEGLAHPDLTNFLQKSLPKKKKH--VVLGINDSKLAGSLTEA 109
Query: 397 L-EIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVARLAL 519
+++ G + EILRG R HF L K L + S A+L+L
Sbjct: 110 FPDLKLVFGGVITEILRGTRVHFERLAKNLPHHSLSKAQLSL 151
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/58 (37%), Positives = 38/58 (65%)
Frame = +2
Query: 83 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALE 256
+VL+EH+AG+AL ++ EF++ L +V+ + D +F+ +V L +F P K+ ALE
Sbjct: 7 FVLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYKFSQIVELASFDPFKNTEAALE 64
>AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical
protein W01B11.3 protein.
Length = 487
Score = 81.8 bits (193), Expect = 5e-16
Identities = 31/76 (40%), Positives = 51/76 (67%)
Frame = +3
Query: 483 YPQSVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYH 662
+ + + L + HS +R +VKFN ++D MI+ +++LLD LDK++N + MR+REWY +H
Sbjct: 129 HKEEMNAMNLAVAHSLARYKVKFNPEKIDTMIVQAVSLLDDLDKELNNYVMRVREWYGWH 188
Query: 663 FPELVSIVPENHLYTK 710
FPEL + ++ Y K
Sbjct: 189 FPELGKTIQDHQAYAK 204
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 268 VSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRG 447
++EG L + L L+ + + +K L V D KLG I E L + C H ++ E++RG
Sbjct: 63 ITEGKLSKTLKKLLKSSVDETEK-----LAVGDAKLGNLIKEKLSLNCVHDSSINELMRG 117
Query: 448 IRYHFHSLI 474
+R H L+
Sbjct: 118 VRAHIEDLL 126
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/60 (25%), Positives = 36/60 (60%)
Frame = +2
Query: 86 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALEIST 265
VLFE +AG+A+F+++ ++L + + E + ++ + L++F+ K+ A+E ++
Sbjct: 3 VLFEVAAGYAVFKLSNEKKLKN-VDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVEATS 61
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/88 (22%), Positives = 35/88 (39%)
Frame = +3
Query: 315 GSSKKEETVKMHTRCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSLPLAHQRSYPQS 494
G+ +K C G + R L V+ + + DF + S+ Q+S+
Sbjct: 526 GAQMNNNKLKKSKNCLGDNDMYASHRSLQEYVNEVQKTKVDFSGGSQSIVSLVQKSHDND 585
Query: 495 VQCGTLGLGHSYSRARVKFNVHRVDNMI 578
T G + ++ K +V RV+N I
Sbjct: 586 GFSKTKGNSYYKKESKEKVDVDRVENEI 613
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 606 LDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFM 725
+D ++N +R+ Y FPEL ++VP Y + +
Sbjct: 112 IDNEINVIHKFVRDKYEKRFPELETLVPNALTYLATVQLL 151
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
C49C3.4 protein.
Length = 1566
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 555 VHRVDNMIIPSIALLDQLDKD----VNTFSMRIREWYSYHFPELVSIV 686
V+ +D+ +IP + ++ LD+D V+T S R +++ PE IV
Sbjct: 1394 VYLLDDPLIPKVQIISDLDRDSSNAVSTSSSDTRTMLTFNIPEEYDIV 1441
>U28941-7|AAC71104.1| 330|Caenorhabditis elegans Hypothetical
protein F31D5.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 DRCFGNINAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGV-LDPKLGAAI 387
D CF +I VS+G + LFL+ P KK K +L + L P LG A+
Sbjct: 197 DDCFEDIRIVSDGGTTFPVALFLQ--YPSLKKVRKWSLSLRLFPDLGQAV 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,770,457
Number of Sequences: 27780
Number of extensions: 356617
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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