Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30235
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...   115   3e-26
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil...   114   6e-26
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...    94   1e-19
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    93   2e-19
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron...    64   1e-10
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai...    29   3.2  
At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase f...    29   4.2  
At4g19650.1 68417.m02887 mitochondrial transcription termination...    28   5.5  
At1g73210.2 68414.m08473 expressed protein                             28   5.5  
At1g73210.1 68414.m08472 expressed protein                             28   5.5  
At5g23680.1 68418.m02776 sterile alpha motif (SAM) domain-contai...    27   9.6  
At4g33920.1 68417.m04813 protein phosphatase 2C family protein /...    27   9.6  

>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score =  115 bits (277), Expect = 3e-26
 Identities = 49/80 (61%), Positives = 66/80 (82%)
 Frame = +3

Query: 486 PQSVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHF 665
           P  ++   LGL HSYSRA+VKFNV+RVDNM+I +I +LD LDKD+N+F+MR+REWYS+HF
Sbjct: 141 PGDLEKAQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHF 200

Query: 666 PELVSIVPENHLYTKCAEFM 725
           PELV IV +N+LY K ++ +
Sbjct: 201 PELVKIVNDNYLYAKVSKII 220



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
 Frame = +1

Query: 259 INAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVP 432
           INAVSEG + ++L  FLE  LPK K  K+ K +LGV +PK+G+ I EA +I C     V 
Sbjct: 63  INAVSEGYMSDELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFVH 122

Query: 433 EILRGIRYHFHSLIKGLTLKACSVARLALA 522
           E+LRG+R HF   IK L       A+L LA
Sbjct: 123 ELLRGVRQHFDRFIKDLKPGDLEKAQLGLA 152


>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 522

 Score =  114 bits (274), Expect = 6e-26
 Identities = 48/80 (60%), Positives = 66/80 (82%)
 Frame = +3

Query: 486 PQSVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHF 665
           P  ++   LGL HSYSRA+VKFNV+RVDNM+I +I +LD LDKD+N+F+MR+REWYS+HF
Sbjct: 141 PGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHF 200

Query: 666 PELVSIVPENHLYTKCAEFM 725
           PELV IV +N+LY + ++ +
Sbjct: 201 PELVKIVNDNYLYARVSKMI 220



 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
 Frame = +1

Query: 259 INAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVP 432
           +NAVSEG++ ++L  FLE  LPK K  K+ K +LG+ +PKLG+ I EA +I C     V 
Sbjct: 63  VNAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVL 122

Query: 433 EILRGIRYHFHSLIKGLTLKACSVARLALA 522
           E+LRG+R HF   IK L       ++L LA
Sbjct: 123 ELLRGVRQHFDRFIKDLKPGDLEKSQLGLA 152


>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 39/73 (53%), Positives = 55/73 (75%)
 Frame = +3

Query: 507 TLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIV 686
           +LGL HS +R ++KF+  +VD MII +I LLD LDK++NT++MR+REWY +HFPEL  I+
Sbjct: 138 SLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKII 197

Query: 687 PENHLYTKCAEFM 725
            +N LY K  + M
Sbjct: 198 SDNILYAKSVKLM 210



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/45 (55%), Positives = 28/45 (62%)
 Frame = +1

Query: 349 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGL 483
           TL V D KLG  I E L+I C H  AV E+LRG+R  F  LI GL
Sbjct: 85  TLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQFTELISGL 129



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +2

Query: 86  VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALEIST 265
           VL+E +AGFALF+V +  ++A      +E  T       +V L AF+   +   ALE   
Sbjct: 4   VLYETAAGFALFKVKDEGKMANVEDLCKEFDTP-DSARKMVKLKAFEKFDNTSEALEAVA 62

Query: 266 RYLK 277
           + L+
Sbjct: 63  KLLE 66


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 39/73 (53%), Positives = 55/73 (75%)
 Frame = +3

Query: 507 TLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIV 686
           +LGL HS +R ++KF+  +VD MII +I LLD LDK++NT++MR+REW+ +HFPEL  IV
Sbjct: 137 SLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIV 196

Query: 687 PENHLYTKCAEFM 725
            +N LY K  + M
Sbjct: 197 QDNILYAKAVKLM 209



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/45 (55%), Positives = 27/45 (60%)
 Frame = +1

Query: 349 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGL 483
           TL V D KLG  I E L+I C H  AV E+LRGIR     LI GL
Sbjct: 84  TLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGIRSQLTELISGL 128


>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 445

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = +3

Query: 525 SYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLY 704
           S+  AR K  +     MII SI+LLD LDK++NT++  + E Y  HFPEL +IV +N LY
Sbjct: 113 SHILARYKLKITSDKTMIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILY 172

Query: 705 TKCAEFM 725
            K  + M
Sbjct: 173 AKVVKLM 179



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +1

Query: 352 LGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGL 483
           L V DPKLG  I+E L+I+C H  AV E+LRG+R     L+ GL
Sbjct: 57  LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGL 100


>At1g44910.1 68414.m05146 FF domain-containing protein / WW
           domain-containing protein contains Pfam profiles
           PF01846: FF domain, PF00397: WW domain
          Length = 946

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 36/121 (29%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
 Frame = +1

Query: 226 TTQVGDRCFGN-INAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALE 402
           TT  G + + N +   S+  +PEDL L  E      +K S    G       AA S  L 
Sbjct: 247 TTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTPLSHHAASSSDLA 306

Query: 403 IQCTHTGAVPEILRGIRYHFHSLIK-GLTLKACSVARLALATHTHELVSSSMFTEWTT*S 579
           +  T T  VP     +  H  S I+ GL +       +A  T T   +S    TE TT  
Sbjct: 307 VS-TVTSVVPSTSSALTGHSSSPIQAGLAVPVTRPPSVAPVTPTSGAISD---TEATTMY 362

Query: 580 Y 582
           Y
Sbjct: 363 Y 363


>At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile: PF01553
           acyltransferase
          Length = 502

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 480 SYPQSVQCGTLGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTF 629
           +Y Q +   TLG   +    + K+ V   ++  +  ++LLDQL K V+TF
Sbjct: 448 NYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSYLSLLDQLKKVVSTF 497


>At4g19650.1 68417.m02887 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 557

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/82 (28%), Positives = 32/82 (39%)
 Frame = +1

Query: 274 EGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIR 453
           E  LP  L    + G+      + C  G+   K+G    EA EI    +G +   LRG  
Sbjct: 145 ETFLPRKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRG-- 202

Query: 454 YHFHSLIKGLTLKACSVARLAL 519
           Y    L K   +K  +   L L
Sbjct: 203 YENLGLSKATVIKLVTSCPLLL 224


>At1g73210.2 68414.m08473 expressed protein 
          Length = 312

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 454 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 350
           NV + K PGL+     +   P  W+ +AW P++ +
Sbjct: 172 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 205


>At1g73210.1 68414.m08472 expressed protein 
          Length = 314

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 454 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 350
           NV + K PGL+     +   P  W+ +AW P++ +
Sbjct: 174 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 207


>At5g23680.1 68418.m02776 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 295

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 510 LGLGHSYSRARVKFNVHRVDNMIIPSIALLDQLDKDVNTFSMRIREWY 653
           LGLG  +      F +H VD  ++P + L D  D  +N    R R+ Y
Sbjct: 242 LGLGRYWPM----FEMHEVDEQVLPLLTLEDLKDMGINAVGSR-RKMY 284


>At4g33920.1 68417.m04813 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 380

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 355 GVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFH 465
           G+    + AA+ EA + +    G + +I +GIR HFH
Sbjct: 292 GIARRLVRAALEEAAKKREMRYGDIKKIAKGIRRHFH 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,638
Number of Sequences: 28952
Number of extensions: 333192
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)