Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30234
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42179| Best HMM Match : rve (HMM E-Value=9.8e-05)                   28   7.2  
SB_8851| Best HMM Match : rve (HMM E-Value=6.2e-17)                    28   7.2  
SB_56069| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)                   28   7.2  
SB_34781| Best HMM Match : rve (HMM E-Value=3.4e-19)                   28   7.2  
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)                   28   7.2  
SB_55741| Best HMM Match : rve (HMM E-Value=5.4e-18)                   28   9.5  
SB_53661| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.2)             28   9.5  
SB_52693| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_30087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)                    28   9.5  
SB_48292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_27019| Best HMM Match : rve (HMM E-Value=6.6e-15)                   28   9.5  
SB_21217| Best HMM Match : rve (HMM E-Value=5.4e-18)                   28   9.5  
SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      28   9.5  

>SB_42179| Best HMM Match : rve (HMM E-Value=9.8e-05)
          Length = 211

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQ 554
           FH WL Q LF+ QY K+
Sbjct: 187 FHRWLAQCLFRAQYSKE 203


>SB_8851| Best HMM Match : rve (HMM E-Value=6.2e-17)
          Length = 469

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQ 554
           FH WL Q LF+ QY K+
Sbjct: 389 FHRWLAQCLFRAQYSKE 405


>SB_56069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQ 554
           FH+WL Q LF+ QY K+
Sbjct: 114 FHSWLAQRLFRAQYSKE 130


>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQ 554
           FH WL+Q LF+ QY K+
Sbjct: 233 FHRWLVQRLFRAQYSKE 249


>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
          Length = 809

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQS*S-YTVFVLCPTEQQLSS 608
           FH WL Q LF+ QY K+  S  T    C T + LS+
Sbjct: 765 FHRWLAQRLFRAQYSKELASGKTNSQCCITRRTLST 800


>SB_34781| Best HMM Match : rve (HMM E-Value=3.4e-19)
          Length = 315

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQ 554
           FH WL+Q LF+ QY K+
Sbjct: 178 FHRWLVQRLFRAQYSKE 194


>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
          Length = 983

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 504  FHTWLLQILFKHQYKKQS*S-YTVFVLCPTEQQLSS 608
            FH WL Q LF+ QY K+  S  T    C T + LS+
Sbjct: 939  FHRWLAQRLFRAQYSKELASGKTNSQCCITRRTLST 974


>SB_55741| Best HMM Match : rve (HMM E-Value=5.4e-18)
          Length = 325

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 492 LLQ*FHTWLLQILFKHQYKKQ 554
           L + FH WL Q LF+ QY K+
Sbjct: 180 LAESFHRWLAQRLFRAQYSKE 200


>SB_53661| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.2)
          Length = 256

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 115 ICTLRFLQAFSEVIG*LIERFYCLQLRRQF 204
           IC LR L+A+ E    L+ + Y L  RR+F
Sbjct: 163 ICMLRLLEAYLESAPQLVLQLYILSYRRRF 192


>SB_52693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQS*SYT 569
           FH WL Q LF+ QY K+  S T
Sbjct: 113 FHRWLAQRLFRAQYSKELASET 134


>SB_30087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 486 KMLLQ*FHTWLLQILFKHQYKKQ 554
           K   + FH WL Q LF+ QY K+
Sbjct: 6   KAFAESFHRWLAQRLFRAQYSKE 28


>SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 809

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQ 554
           FH WL+Q LF+ QY K+
Sbjct: 706 FHRWLVQRLFRAQYPKE 722


>SB_48292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 504 FHTWLLQILFKHQYKKQ 554
           FH WL Q LF+ QY K+
Sbjct: 113 FHRWLAQSLFRAQYSKE 129


>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1910

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 486  KMLLQ*FHTWLLQILFKHQYKKQ 554
            K   + FH WL Q LF+ QY K+
Sbjct: 1838 KAFAESFHRWLAQRLFRAQYSKE 1860


>SB_27019| Best HMM Match : rve (HMM E-Value=6.6e-15)
          Length = 684

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 486 KMLLQ*FHTWLLQILFKHQYKKQ 554
           K   + FH WL Q LF+ QY K+
Sbjct: 539 KAFAESFHRWLAQRLFRAQYSKE 561


>SB_21217| Best HMM Match : rve (HMM E-Value=5.4e-18)
          Length = 325

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 492 LLQ*FHTWLLQILFKHQYKKQ 554
           L + FH WL Q LF+ QY K+
Sbjct: 180 LAESFHRWLAQRLFRAQYSKE 200


>SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 498 Q*FHTWLLQILFKHQYKKQ 554
           Q FH WL Q LF+ QY K+
Sbjct: 721 QSFHRWLAQRLFRAQYSKE 739



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 498 Q*FHTWLLQILFKHQYKKQ 554
           Q FH WL Q LF+ QY K+
Sbjct: 777 QSFHRWLAQRLFRAQYSKE 795


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 504  FHTWLLQILFKHQYKKQ 554
            FH WL Q LF+ QY K+
Sbjct: 999  FHRWLAQSLFRAQYSKE 1015


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,129,307
Number of Sequences: 59808
Number of extensions: 334878
Number of successful extensions: 809
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)